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Having run Fastqc, Rcorrector, and FilterUncorrectabledPEfastq.py on NCBI SRR reads - I am now trying to add in
RemoveFastqcOverrepSequenceReads.py
but I am getting an UnboundLocalError:
``…
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Need to contain:
- Trimming info
- Kraken results
Implement FastQC data in the report, or simply stick to the multiQC report?
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Hi, someone can help me with that error?
```
Pipeline completed with errors-
ERROR ~ Error executing process > 'NFCORE_SMRNASEQ:FASTQ_FASTQC_UMITOOLS_FASTP:FASTP (L4)'
Caused by:
Process `NF…
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https://ming-lian.github.io/2019/08/19/Bioinfo-ML-Club-6th/
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Hello everyone,
I am experiencing problems with the installation of NewHybrids.
My OS is High Sierra 10.13.1
I have installed the Xcode tools, but when I try to follow the installation instruction…
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## Bug report
### Expected behavior and actual behavior
Hello, hope you are doing well!
I expected to be able to run `nf-core/rnaseq` using AWS Batch. We created a the first two CloudForma…
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### Description of bug
Hi,
I was previously able to run multiqc with htstream support. However, I have recently upgraded to a new computer (ubuntu 22.04.1) and my new multiqc installation doesn'…
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I am using nextflow with a SGE task scheduler. I've noticed that the pipeline submits many very similar jobs that are batched across a number of samples (e.g., FastQC on hundreds of RNA-seq files with…
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Hi, I'm using a conda env with python 2.7 and when I enter "R --version" it lists the OS version 4.3. Within the py2_7 conda env, I see that the lowest R pkg available is now 3.3.1 (i.e, via typing "c…
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Hey, everyone. Hope everyone is doing ok.
I am a masters student and I am writing my master thesis on tick microbiome. While I am collecting ticks and doing some lab/field work, I am also using data …