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Hey!
Can the correlations between the tree and the metadata for factorization accommodate phylogenetic information of the host as metadata? Eg. I want to compare if the microbial 16S tree can be fa…
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Hello,
The ultimate goal of my study is to generate a phylogenetic tree based on the core genome with branch values generated from the concatenation of many different gene trees.
I have ran Pan…
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I use the "Name" attribute for secondaryIdentifier, which I merge on, so this matters in the mine loads.
Glycine_max/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3
```
glyma.…
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Hi, I used hicPCA to analysis my hic data, here is my code:
hicPCA -m hic_corrected.h5 --outputFileName pca1.bw pca2.bw --format bigwig --pearsonMatrix pearson.h5 --method dist_norm --obsexpMatrix …
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## Problem description
This is both a question and a crash report:
I have been given a series GFF files that have issues with children coordinates (I don't control the annotation source). Speci…
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Hi RERconverge team,
I'm running into a couple of errors/issues when I try to run RERconverge with my data.
Issue 1: While my trees are all subsets of one complete tree, none of them actually ha…
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Hello it's me again 😄
So I've tried to continue my grouped and integrated analysis using only 2 samples and during both steps **Int_Clust_Markers_Annot_GE** and **Grp_Clust_Markers_Annot_GE** afte…
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(from pranjal)
ASTRAL fails on inputs where a single taxon is contained in
parentheses. Technically these might not be legal newick files but a
better error message might be nice.
e.g.
$ …
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Seems like if you request multiple processors the FastTree step should try to use FastTreeMP so it can gain speedup for the tree step?