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To facilitate access to GTEx data to the DCPPC, can the Broad Data Steward team please submit XML to the NCBI Sequence Read Archive (SRA) Sequence Data Delivery Pilot (SDDP) for all GTEx data that is …
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When deploying a KnetMiner dataset, an admin should be able to declare in maven-settings.xml if the deployed resource will be public (eg wheat, rice, Arabidopsis, COVID-19) or private (paid species). …
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## Sept 26, 2024
@natefoo started the process:
- Galaxy dbKeys will be set to GenBank or RefSeq IDs (`assembly version ID` column in https://brc-analytics.org/data/organisms)
- Names (in tool dropdo…
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Dear Christopher,
I was looking at the IBS calculations produced by plink 1.9, and observed some problems relevant to my work. I created a minimal BED file with just one SNP and with 4 individuals…
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Hello, I've been following the wiki to try to run mgatk tenx (v0.6.1) on 10x scRNA data using the following command:
```
mgatk tenx -bt CB -g mm10 --snake-stdout -c 12 -ub UB -i results/22_6/outs/po…
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Hello,
I am a newbie trying to run Intervar in an Amazon Linux AMI. I downloaded and installed ANNOVAR and then Intervar, and I've followed the instructions to run it. Everything goes well until it…
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Given a (minimum and) maximum read length, and a PRG,we should be able to
1. decide that there are some places we will never be able to draw inference on, so we might as well ignore (which means d…
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Hello,
I recently followed the protocol of m6A sequencing which is published in 2013 (Dominissini, Dan, et al. "Transcriptome-wide mapping of N6-methyladenosine by m6A-seq based on immunocapturing an…
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_From @olgabot on July 6, 2014 22:55_
Hi @jbenet and @maxogden! Thank you so much for the time you took to meet with @mlovci and me this weekend. Here's an overview of our current data management sit…
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Sorry for this question, but could someone help me understand this graph?
P.S.: IDs with "_REF" are ref…