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Dear Shorah developers,
First, I would like to say that you have a great program that is very useful for local haplotype reconstruction, especially if we try to genotype across a larger region whil…
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At Facebook we are building a data reading framework for PyTorch which can efficiently read from data stores like Hive, MySQL, our internal blob store and any other tabular data sources. The framework…
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Reference database augmentation
Easy to access and well curated reference databases empower open-source research and help scale the
impact of microbiome research. NMDC will partner with the SeqCode In…
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Hi @rnakato,
I am currently learning to use the programs included in the `ssp_drompa` Docker image and have a couple of questions about `drompa_peakcall`:
1. Should the value assigned to `-wid…
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Hey! I was able to install spacegraphcats and run the two tests provided without any errors. I then tried to test it out myself using one of the Tara metagenomes (reads first cleaned up with fastp the…
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Hi
I currently have access to a cluster on the cloud managed by OpenStack (https://nimbus.pawsey.org.au/)
I've been trying to get Cactus to run with Slurm across all nodes, without much success.…
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@mikelove I usually make the repo and package name specific for a conference for reproducibility's sake. What do you think? Would you prefer a unique repo that evolves through the workshops we give?
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I stumbled on your software, and would be interested to use it on an HPC cluster (e.g., with job management via SLURM). Do you have documentation / protocol to do this? Is running the server (with the…
vsoch updated
5 years ago
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Hi,
I am new to Eggnog-Mapper and barely have experience on using Python. Previously I attempted to install it on Windows computer but failed to run it for some problems that I had no idea how to…
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Dear Byron,
First of, I wanted to thank you for developing this great piece of software. We are really excited to use it coupled with the metagenotypes generated from GT-Pro.
We are trying to de…