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Dear Torsten,
I run the Prokka’s version 1.13, but, the .gbf file was deleted. I installed Prokka on Ubuntu using the command "brew install brewsci/bio/prokka". I thought something was wrong with m…
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Hi
I want to use DriverPower for my WGS data on gastric cancer. I have read the quick start guide but I think the data format is too difficult for me, possibly also for other users to produce. Most o…
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change
viable deletions -> viable deletions protein coding (check, but I don't think we have any data fro RNA's)
inviable deletions , ditto
Conserved in S. cerevisiae -> proteins conse…
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Due to the limits of the previous version of the domain tags, acronyms had to be included within the primary label of the tag. This isn't necessary with these ontologies and the acronyms and labels ca…
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child of
FYPO:0001117 | decreased RNA level during vegetative growth
(maybe group maturation?)
(this is for telomerase)
PMID:29422501
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Dear All,
I was wondering if anyone could explain how the abundance_estimates_to_matrix.pl script works. In the way it is described it seems to take the gene-to-transcript mapping file and groups an…
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hello ,
In the functional annotation part of trinityrnaseq analysis , To find the gene name here mention only UniProt database .
My query is by using this database we will have only coding tra…
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Dear Magdoll,
I am writing to inquire whether it was possible for you to train the known refseq sequences with ANGEL. I have downloaded the refseq sequences from ftp://ftp.ncbi.nlm.nih.gov/refseq/H_s…
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The reference track shows data regarding genes, transcripts and exons for the reference track in the viewer. The endpoint will have the following API:
`/reference//?include_transcripts=`
Transcr…
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Tofu + STAR + MatchAnnot commands:
```
# Run Tofu
source activate myenv
collapse_isoforms_by_sam.py --fq --input GM12878_chr1_canonicalOnly.fq -s sorted.GM12878_chr1_canonicalOnly.sam --dun-merge…