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[Home](https://bitbucket.org/snakemake/snakemake/wiki/Home) [Documentation](https://bitbucket.org/snakemake/snakemake/wiki/Documentation)
**Presentations**
- http://slides.com/johanneskoester/deck-1#…
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## Description
The idea is simple: we need more advanced workshops as part of SciProg to complement the introductory ones we've been hosting. It has come up previously (see #89), but nothing came out…
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Hi!
First of all, thanks you for developing this package, it's very usefull and I find it better than using TAC.
I have 48 HTA2_0 samples and I wanted to study the alternative splicing. In a fir…
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I am trying to build YodQA using below command. I am facing this issues with dependency download. Please help.
./gradlew web -q -Dcz.brmlab.yodaqa.use_bing=yes -Dorg.slf4j.simpleLogger.log.cz.brmlab.…
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Not all are directly relevant, this has become somewhat of a reading list for myself.
- [ ] Sequence Alignment/Map Format Specification
- [ ] The Sequence Alignment/Map format and SAMtools
- [ ] Trim…
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BDS running with SGE doesn't seem to see some jobs finish. This doesn't happen all the time. Here's an example. I have 27 samples consisting of 2 files each (fq1, fq2). For each sample, I start a …
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**NGS: RNA Analysis** tool addition
Tool Shed link: https://toolshed.g2.bx.psu.edu/view/iuc/package_ballgown_1_0_3/3b4172677e20
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Hi Brad,
My bcbio run has been unable to proceed past a certain T-N paired sample at the prioritisation step, up to the generation of the manta tsv files. I checked the commands and can't find anyt…
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Our BIOMED-2 protocol based BCR analysis shows Overlapped and not aligned: 1138271 (66%)
I would like to know what could potentially make the overlapped reads couldn't be aligned.
Thanks!
> ===…
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Hi,
I am getting the following error when I test the Cancer tumor normal example. I think there are two main errors
1> "Aligning lane 1_2014-08-13_dream-syn3 with bwa aligner cat: write error: Br…