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**Is your feature request related to a problem? Please describe.**
The bio-imaging field seems to consolidating around OME tiffs as (one of) the format to use for representing image data.
We curren…
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* Picasso version: v0.5.6
* Python version: 3.8.16
* Operating System: MacOS Monterey 12.5 (M1 pro)
### Description
I followed the installation instructions for the latest version of Picasso on …
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* Picasso version: 0.5.7
* Operating System: win10
* compiled version- end user
### Description
In the latest version of Picasso i can not upload a 3D calibration file in Localize (.nd2 or .ti…
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Hi - I've been looking at the examples and videos for MDV and I'm thinking about whether it could be a replacement for https://github.com/will-moore/parade-crossfilter as a way of visualising images a…
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After converting [CMU-1-Small-Region.svs](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-Small-Region.svs) to OME-Zarr via `bioformats2raw` and then converting the latter to OME…
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@giovp we need to test if we can use readers (as the one in your new pr) or if we need for some large datasets to use converters. The reason is that `Dask` allows to represent lazily the data in both …
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**Describe the bug**
I was using mcmicro platform to run cellpose segmentation on a multiplexed image and I supplied the following command hoping to apply 8 different membrane markers (channel 23 36 …
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Hi,
I have `ome.tif` files generated with `qupath` that I can not open with `TissUUmaps`. I can only open them after converting to tif format which increases the size a lot. Is there a way to use an …
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Hi Christoph,
I might've run into the side effect with the `def series(self) -> list[TiffPageSeries]` function mentioned here:
https://github.com/cgohlke/tifffile/blob/08290c7ae44a4248f64d7cd0e743…
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hi @thewtex ,
currently, a 3d spatial-image has dimensions `("z", "y", "x", "c")`. This order cannot be written to NGFF due to constraints on the channel axis always before spatial dimensions axes …