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**1. What were you trying to do?**
Trying to replicate the Giraffe pipeline from [_A draft human pangenome reference_](https://www.nature.com/articles/s41586-023-05896-x) using the CHM13 pangenom…
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Hi John,
Great thanks for the super useful and beautiful GENESPACE for visualising genome synteny.
I did a successful run with the GENESPACE for 6 de novo assemblies. I find that in the output o…
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Dear odgi team,
I want to compile odgi on my Mac, can you suggest something about installing odgi on Mac arm64.
Thanks,
Du
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### Data Owner Name
Human PanGenomics Project
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
### Social M…
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**1. What were you trying to do?**
I was trying to create a gsca index of a graph created with pggb.
**2. What did you want to happen?**
The index to be created successfully (as happened…
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Hello,
I am trying to run cactus-graphmap using the following command.
cactus-graphmap jobstore test_seqfile.txt test_run.gfa test_run.paf --workDir /bigdata/seymourlab/idiaz026/Citrus_non-codin…
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Are there any examples provided of loading a GFF file into Redis starting from scratch? I'm mystified. I can't figure out how to do it! I'm one of those users that really needs an end-to-end example o…
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Hello,
I am running GENESPACE with the example in the tutorial (https://htmlpreview.github.io/?https://github.com/jtlovell/tutorials/blob/main/genespaceGuide.html), just to be sure everything is wo…
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https://github.com/HuffordLab/NAM-genomes/tree/master/te-annotation
Generate de novo TE library for each genome and perform initial annotation.
Is it necessary for --anno 1 for this step?
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I am running Cactus with 27 fungal species, and I can't get it to complete. It keeps stopping after giving a message about disk usage and then saying it has jobs waiting to run. I'm on a slurm cluster…