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I am running 8 pipelines with 7 stages each. In the third stage (units 32 - units 39) some units finish in the correct time (~ 2 hours) while others end up stalling for well over 8 hours. I check the …
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I have got a pacbio raw data for about 4Gbp plant genome with about 32x coverage. I use the canu 2.0. I used on cluster with only one node (48 CPU core and 126 GB ram)
Firstly, I tried only error c…
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Hi,
I cannot get submitted jobs because canu tries to use `-l nodes=1:ppn=1` instead of `-l select=1:ncpus=24`.
```
Canu snapshot v1.5 +27 changes (r8227 43dc29f8aa8cdd8f31c61482711839e75d4d0be…
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reposting this hear as i haven't received a reply at the rcraid-dkms github issue tracker in 3 days.
i recently upgraded to a Threadripper CPU and x399 chipset motherboard(an Asrock Phantom Gaming …
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Hello,
I'm trying to run many Example code concurrently.
http://saga-project.github.io/saga-python/
Using thread, I run Example Codes.
Until 10, it works well.
But beyond 40, there is a problem.
so…
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https://github.com/mschubert/clustermq/wiki/PBS mentions `cores` which should be `n_jobs`;
```
#PBS -N {{ job_name }}
#PBS -l select=1:ncpus={{ cores | 1 }}
#PBS -l walltime={{ walltime | 1:00:0…
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Hi Dask team!
My colleague @sntgluca and I have been very enthusiastic about the possibilities enabled by `dask-jobqueue` at NIBR! It's been a very productivity-enhancing tool for me. At the same t…
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Hi,
If I run the examples/local/ENCSR356KRQ_subsampled.json pipeline, I've found that the cpu and memory settings are not getting set on my cluster when I customize those values. It appears to jus…
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Hi @hhhjort, @josephveach
I would like to have a few clarifications on Prebid server bidding/auction process.
When DSP returns a bid response, where is the auction happening? If it is in Prebi…
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Hi there,
Canu runs one of node on my HPC, however it fails when using it with the PBSPro grid, jobs seem to start and then Meryl errors regarding being unable to 'find the number of jobs'.
Any …