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human NUBP1 is annotated to extracellular exosome from PMID:23376485
http://www.sciencedirect.com/science/article/pii/S1874391913000407
but I can't see this gene mentioned in this paper? Could you pl…
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Definition: A format for storage, exchange, and processing of protein identifications created from ms/ms-derived peptide sequence data.
Parent: format_3245
Documentation: http://tools.proteomecenter.…
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Hi, my name is Trent and I have been using PIA the past few weeks in attempt to generate some Protein Inference results from ms2 searches using Mascot and Comet.
I have mostly been using the Knime w…
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Thanks for a great piece of software!
I would like to know how to figure out which peptide identifications in the .csv reports came from which of my input .mgf files. The names of my .mgf files do …
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Hello,
I tried the -proteinExport function for processing the sample data and found problems in the result. I used the command line `-infile yeast-gold-015-filtered.pia.xml -paramFile parameter.xml -…
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Hi.
I like the [filter option](https://github.com/OpenMS/OpenMS/issues/2531) added to FalseDiscoveryRate. However, I recognized that the output when filtering for 0.01 peptide FDR is not exactly th…
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Hi,
right now i am trying to recreate the results of MSFragger + Philosopher as in the [Paper](https://www.nature.com/articles/nmeth.4256#an1).
Are the default parameters for open searching in MS…
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Hi,
there are still some formats left, which we still miss for ELIXIR-registration of all our de.NBI software and services:
ADF Array Design Format …
germa updated
6 years ago
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Hi,
I am having an issue processing a huge data set (~1600 files). For convenience I have all the files in the same folder.
I was able to successfully process the data with MSfragger and protein/pep…
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Hello,
I'm glad to see that mzML can be used as an input. However, I noticed some differences when I use mzML and when I use a RAW file. I ran the following
```
python $moffdir/moff.py --input…