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output_monkey_uniprot_pdbfiles folder is corrupted
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#### Current behavior:
31 genes are discovered to be uncorrelated with their corresponding reactions in `Bile acid biosynthesis`/`Bile acid recycling`
| Gene | UniProtID | Reaction | GPR | C…
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- [x] Protein activation
- [ ] Protein decay
- [ ] Protein folding
- [ ] Protein modification
- [ ] Protein processing I
- [ ] Protein processing II
- [ ] Protein translocation
- [ ] Ribosome assembly…
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Hi,
I'm testing the dataset curated from protein family, e.g., `configs/curators/sbap_core_ki_protein_family.py`. And I get the following exception:
```
Traceback (most recent call last):
File…
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Hi David,
I ran into this amazing package, and since I'm more of a protein person, I was wondering if you could make something similar to represent protein domains and secondary structure.
L…
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Running the following command:
```bash
python run.py \
--model_type "ligand_mpnn" \
--seed 111 \
--pdb_path "./inputs/1BC8.pdb" \
--out_folder "./outputs/sc_defau…
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I can't reproduce [this](https://userguide.mdanalysis.org/stable/examples/analysis/custom_parallel_analysis.html#Parallelization-in-a-split-apply-combine-fashion) section of the user guide currently, …
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Hi,
Thanks for this fantastic resource!
When I use the GRCh38-ccREs.bed download from SCREEN,there are some dELS,CTCF-bound and dELS to their near protein coding gene TSS are less than 2kb.
GE…
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I can't find this complex in Noctua:
ComplexAc: CPX-566
Even though it has been in our GPI since 2024-05-04
Can you let us know of we are doing anything wrong in the file or is a Noctua load…
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It should be possible to lookup profiles of individual proteins.
Should be included both in the single analysis and in the comparative analysis