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**Describe your problem**
If I want to start 3D initialization directly in simulation data (includes 100000 2D images stack: mrcfile), how can I write the star file?
The example I write is:'rln…
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Trying to re-extract particles from a data.star file from Refine3D in relion 3.0.6 in 3.1.
I made a new project and re-did motionCorr and CtfFind from scratch.
I copied the data.star to the new …
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See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1910&L=CCPEM&O=D&P=138854.
We never officially supported such STAR files. The reported error itself was caused by the table name from `data_XXX…
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1) relion_reconstruct: It is not possible to give as input phase flipped images. Before the protocol checked if imgSet.isPhaseFlipped()==true and added the flag " --ctf_intact_first_peak" automatic…
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A particle image was compared to the reference and resulted in all-zero
weights (for all orientations). This should not happen, unless your data
has very special characteristics. This has historical…
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In some special cases, it may be beneficial to change the "tau fudge value" and sometimes to values smaller than 1, e.g. 0.1. Now it seems the GUI converts the value as integer. Value of 0.1 becomes …
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after 3d refinement:
![image](https://user-images.githubusercontent.com/6952870/101015587-8c7b7b00-355f-11eb-9912-2a1e33889462.png)
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Hi,
is it possible, or could it be implemented, that relion_refine can be told to copy to scratch only, without continuing with the rest of the job?
For a very large dataset, copying to scratch …
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**Describe the bug**
I'm trying to run a new (not from another refine) relion refine and is failing at the convertInputStep.
**To Reproduce**
Steps to reproduce the behavior:
running relion refi…
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I used box size 600 pix when picking particles using Xmipp. During extraction, box size of 800 pix was used and re-scaled size 200 pix (bin by factor of 4). My particle box size is thus 200 pix. Ho…