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Hello again, now the pipeline is getting this error:
```
executor > local (821)
[- ] process > merge_fastq -
[44/a23509] process > RegionsBedToIntervalList (R... [100%…
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Hi Tim,
# load processed data matrices for each assay
rna
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_027943255.1
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I've never done transcritpomics where there's been a reference genome! And i realized i haven't done it yet... and should for WSN... so anyway:
there's a published genome for _Pycnopodia helianthoi…
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- [x] add new section of `RNA-Sequencing Analysis Pipeline` to `analysis overview` page: https://docs.icgc-argo.org/docs/analysis-workflows/analysis-overview
- [x] create `RNA-SEQ ANALYSIS` tab on th…
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### Description of bug
Performed
>spades.py -1 SRR_R1_paired.fastq -2 SRR_R2_paired.fastq -o spades_corrected --only-error-correction
and recieved error code: 22
Output dir: /Users/vydang/hw…
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Hello! When running miRge3.0, I encountered an error during the "Summarizing and tabulating results" step. The traceback message and error indicate an issue with setting a DataFrame with multiple colu…
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Hello,
First of all thank you for developing ShortStack pipeline, I'm new to these world of analyzing small RNA-seq data and I found your tool very useful for the identification/annotation step.
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_028408465.1
…
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**1. What were you trying to do?**
I build a graph with `pggb` (two assemblies of the same species but different haplotypes), then converted it to _.pg_ with `vg convert` (v.1.40) then chopped node…