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From branch 18 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
KP.2+C11020T+S:S31del
Query: C11020T,G17334T,del21653
No. of seqs: 106
First: CLIMB-CM7YGUR8/2024, 2024-4-16
…
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I was able to use Pre-trained BioGPT in accordance with the use case.
Could you give us an example code of using Pre-trained BioGPT-Large?
I tried this code.
```
import os
os.chdir('/home/***…
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From branch 86 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C17119T+A2251G+S:F456L(T22930A)
Query: T22930A, C17119T, A2251G
No. of seqs: 21 (South Korea 20 USA 1)
…
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We've had a history of caching issues (https://github.com/nextstrain/ncov-ingest/issues/456, https://github.com/nextstrain/ncov-ingest/issues/392) come up whenever there's a new release of Nextclade o…
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From branch 63 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1.4.5+C20823T+C9073T,A21417G+S:F456L
Query: T18453C,C9073T,T22928C
No. of seqs: 21 (Australia 9 New Zealand…
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It seems that there's many S:S31del lineages emerge now. This deletion was in previous variants but rather rare, however under BA.2.86* it seems much frequent.
A very interesting fact is that this…
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Sub-lineage of:XDR.1
Earliest sequence:2024-06-06|Brazil|EPI_ISL_19284486
Most recent sequence:2024-07-09|USA|
Countries circulating:Brazil(1), Switzerland(1), USA(1)
Sequences:3
[UShER Tree](h…
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Hello,
lets say i have a set of genes from a non-model organism, but i do have gene annotations/descriptions. Can I use those? (without resorting to write javascript). I read the documentation and d…
matrs updated
4 years ago
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A case that is commonly encountered in molecular biology articles is the description of interactions that occur within a sub-cellular compartment (e.g. nucleus) or near a cellular structure (e.g. plas…
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In order to allow lossless compression, insertions need to be included in the Maple format.
I could find this edge case specified in the preprint.
It's easy to do, one just needs to agree to a conve…