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The example code fails immediately with an unused argument error.
```r
#RUV-III-NB code
ruv3nb_out ```
> Error in ruvIII.nb:
> unused argument (strata = sce$cluster_init)
> ```
If I remov…
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### Description of the bug
Hi!
I'm running nf-core/scrnaseq v.2.1.0 but I've had some issues.
Here is the samplesheet1.csv:
sample,fastq_1,fastq_2
DP8400009886BL,DP8400009886BL_L01_7_1.fq.gz,…
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Hi, I want to use the tool with scRNAseq data. Is normalization needed? Or is UMI fine?
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I have been following the "CellRank beyond RNA velocity" vignette and I am currently stuck on the 'compute_projection' step. When I execute this, it says: "AttributeError: 'CytoTRACEKernel' object has…
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https://mp.weixin.qq.com/s/jR2OdJQPfBAfxSLSYPyqUw
ixxmu updated
10 months ago
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### Description of the bug
I'm trying to download `scrnaseq` via the `nf-core/tools` python package, but this produces a "Cannot parse container string" error.
As there were [similar](https://gi…
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### Description of the bug
Hello,
I am testing the alevin-fry branch and came across this error message at the indexing step:
`Error: pyroe failed to return succesfully ExitStatus(unix_wait_status(…
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As we head into May 2023's intro scRNAseq workshop, we're rearranging some topics. We'll be moving the pathway analysis day to advanced, and moving the cell typing to intro.
This issue will track s…
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Dear CellBender team,
I just started using your tool to remove ambient RNA from my 10x scRNAseq dataset and I found that when loading `CellBender` output: `adata = anndata_from_h5(file='VMC3_cellbe…
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As we head into May 2023's intro scRNAseq workshop, we're rearranging some topics. We'll be moving the pathway analysis day to advanced, and moving the cell typing to intro.
For this issue, we'll w…