-
-
Hi,
We ran vartrix by:
$vartrix_dir/vartrix_linux --cell-barcodes $input_barcode --fasta /gpfs/genomedb/cellranger/refdata-cellranger-atac-GRCh38-1.2.0/fasta/genome.fa --bam $input_bam --vcf $ou…
-
HI Thank you for your great package for the TCR analysis.
I wonder if this package also can work on the BCR analysis also ,because the codes seems can also work on the BCR.
If not do you have any ad…
-
https://mp.weixin.qq.com/s/VOcwQ8hAgQqetpKpeHKYpQ
ixxmu updated
3 years ago
-
Hello,
I'm relying on bamtools to build an index structure for 10x genomics barcodes.
The basic idea is to be able to quickly retrieve any alignment in the BAM file that contains a given barcode.
…
-
-
Request to submit a portal to the HCA data portal registry
- Tool title: GranatumX
- Contact name: GranatumX development team
- Contact email: lana.garmire.group@gmail.com
- Who to attribute: L…
-
In GitLab by @grst on Mar 16, 2020, 15:08
Include demo datasets as part of the package (`sctcrpy.datasets`) similar to how it is done in scanpy.
Nice datasets to include:
### 10x
- [x] https://www…
-
I would like to use phemd on data we generated with the 10x Genomics Visium Spatial Transcriptomics platform.
Would you have any guidelines or code on how to import the expression data into R in orde…
-
Hi
I can export csv files from SeqGeq and I would like to use them with Azimuth but I have to transform them. Azimuth only accepts the following formats:
Seurat objects as RDS
10x Genomics H5
…