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Hey standR team!
I am reaching out with a question regarding the application of the standR workflow to the Cancer Transcriptome Atlas (CTA). I am encountering challenges while attempting to utiliz…
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Can you please provide a list of the options that the argument markers_to_test can take?
I would like to do differential states analysis using the type markers.
markers_to_test = id_type_markers …
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Hi
Great tool - thanks for writing it. I am running an RRA analysis and it crashes out with:
```
> FluteRRA(gene_summary = "SOX2.gene_summary.txt",sgrna_summary = "SOX2.sgrna_summary.txt",keyt…
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Does the current Seurat package support the visualization of H&E images obtained from Visium Cytassist? Because the size of them may vary according to experiments, so the functions such as `SpatialFea…
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Hi Aaron,
I used `read10xCounts(..., type = "HDF5")` to load a HDF5 file from CellRanger v3.
I was surprised to get an error when I then ran `scater::calculateQCMetrics()` on the result.
Ultimately…
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**Describe the issue**
Hello,
I am having an issue trying to add continuous clinical features to my oncoplot.
If I add more than one clinicalFeature that has continuous values the colors applie…
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Hi
When I run sleuth_live(so), the tab for "scatter plots" gives this error (only for the first plot):
Error in as.data.frame.default: cannot coerce class "c("quosure", "formula")" to a data.fr…
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Hello: there seems to be an issue with merging subset seurat objects, specifically with their SCT assay. Does anyone have a fix for this?
##How error was obtained----
```r
objErro…
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**Describe the bug**
When running in pre-computed mode, the method errors, but works with a numeric matrix.
**To Reproduce**
Run phate function with parameter: `knn.dist.method = "precomputed"`
…
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jjVolcano(diffData = pbmc.markers) I ran this but got an error. I checked my pbmc.markers 。 The error reads as follows
This palatte have 12 colors!
Scale for y is already present.
Adding another sc…