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Hi bioformats developers,
I notice a possible bug with **6.3.1**. For the sample files, please refer to QA **29008**. I am using MATLAB r2019b.
To reproduce the issue, run the following scripts …
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Does `BioformatsLoader.jl` support loading from a web-address?
I think the underlying java implementation does, but there seem to be problems using this feature:
```julia
julia> using JavaCall, Bio…
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@NicoKiaru
You have this class two times:
```
BioFormatsBdvOpener
package ch.epfl.biop.bdv.bioformats.bioformatssource.bioformats.bioformatssource;
package ch.epfl.biop.bdv.bioformats.bioforma…
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### Summary
We experience problems with how exposure time is reported in in the Acquisition tab under Image. Reported values are off by factor 1000.
### Details:
The exposure times for 3 channels…
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The instance that opens each file name is defined as
```
def _read_frame(fn, i, *, arrayfunc=numpy.asanyarray):
with pims.open(fn) as imgs:
return arrayfunc(imgs[i])
```
In my (no…
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I'm running some images through mcmicro that were stitched on the microscope. They are automatically saved as .btf which is bioformats compatible. Probability maps and segmentation run these fine but …
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Trying to install on Ubuntu 14.04.5.
Ultimately the error is:
`pkg_resources.ContextualVersionConflict: (javabridge 1.0.14-1-gdf84bf8 (/usr/people/bioc1301/miniconda2/envs/chromagnon/lib/python2…
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7/10 images that I have tried to open in QuPath will not open correctly. The 3 that have opened correctly are the same file type. When I open the images in NIS Elements, they look fine. The files that…
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@NicoKiaru @ssgpers
Opening a CZI file, I am getting below error:
Code:
```
AbstractSpimData spimData = BioFormatsConvertFilesToSpimData.getSpimData( openers );
```
Error:
```
Attempts t…
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Hi,
I'm interested in reading the metadata stored in some CZI files.
When I view these files with Fiji, and choose to display the metadata on OME-XML format, I can see there's a lot of informati…