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Hello,
I am using Canu for the first time, I am trying to assemble a fish genome (de novo) in a grid. However it keeps giving me the error rc=256. First I used canu inside a singularity container an…
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Hi Dr.Chen,
I’m writing this issue because I want to clear up some confusion about the exact working of paraphase.
Firstly, I’m using amplified PacBio Hifi data to analyse the PMS2 region. E…
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Hello!
In my current project, we used DADA2 on a set of 16S Full-length PacBio CCS reads including the Zymo Mock sample.
Read tracking showed that I lost ~50% of the reads after the filtering step…
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Hi I am running a large dolphin feces nanopore sequencing fastq file and I am running into memory issues I think...
How much memory should I ask for to run this sample? Thanks! Katie
Canu v2.2
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Hello,
I have successfully created local databases and annotated the whole genome sequences of more than 50 species via SIFT4G. However, I encountered the following issues with four species.
*…
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back doing rust graphics programming after a long time away.
http://www.piston.rs/image/image/struct.ImageBuffer.html
http://www.piston.rs/image/image/enum.DynamicImage.html
ok writing a text…
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Might we propose a CreateJS Consortium that helps with CreateJS updates? I suppose that is what GitHub and Open Source are all about. Perhaps if we recognize the need and the commitment it will help…
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Hi,
I am attempting to run Canu in my institution's HPC. My commond is following:
```
./canu -p ecoli411 -d /home/project/P20240403/anaylsis/test2 genomeSize=4.8m -pacbio /home/project/P2
024040…
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I've been trying to build our cloud-native pipelines using trioCanu, and think this might be useful for the canu developers.
Show below is the resource usage during `splitHaplotype`.
![splitHaplot…