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I have a moderately sized genome (1 Gb) plant genome that I'm trying to polish with 60X illumina reads using racon. I know I can use racon_wrapper to split the genome to avoid excessive memory requir…
pjm43 updated
6 years ago
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I am getting an error when I try and run Clark with 1.5Tb of RAM for a binned fragment genomes (relatively small). I did install all the databases including viruses and Eukaryotas. What can I do to re…
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I'm running some tests with tower and the `nf-core/rnaseq` pipeline and have a lot of these messages in the nextflow log - not sure whether this is a problem with tower or Nextflow and/or intended:
…
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Currently we have a high level of the IA facets at https://embl-design-language.github.io/Springboard/information-architecture/#facet-structure-and-categories
They are:
```
1. Who
- people
…
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Hi Rhys,
I'm running aviary recover via slurm. I'm submitting the pipeline as a single job which then sends off each rule as a new job. The rule refine_metabat2 is running out of memory and being k…
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Hi,
thanks for developing this. I would really like to use this tool but it takes quite some time, which might be due to the lack of some thread handling?
Is it possible to use some multithreading…
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Hello,
I was testing out your pipeline to see if it would be compatible with how we currently run our demuxing, and ran into some issues. Here is the command:
```
nextflow run csawye01/nf-core-de…
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I followed these instructions with a fresh miniforge install, but I am still getting the warning that others experienced in this thread [#487](https://github.com/oushujun/EDTA/issues/497). For me, it …
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View details in Rollbar: [https://app.rollbar.com/a/jimmy.andrews/fix/item/VariantGrid/4494](https://app.rollbar.com/a/jimmy.andrews/fix/item/VariantGrid/4494)
```
Traceback (most recent call last):
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The traceback:
```
Error in py_call_impl(callable, call_args$unnamed, call_args$named) :
FileNotFoundError: [Errno 2] No such file or directory: '/home/rstudio/workspace//data/SspArc0008_10x_c…