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I installed the program using the conda environment, but when I run it I get the following error:
ERROR 'sjaracne.exe' not found: [Errno 2] No such file or directory: 'sjaracne.exe': 'sjaracne.exe'…
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Proof-of-concept of:
- Canopy cover workflow
- 'The sequence of the overall workflow is: odm_workflow -> soil_mask_workflow -> plot_clip_workflow -> canopy_cover_workflow'
- Including Open Dr…
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Good afternoon, dear PGAP support representatives.
I am experiencing a problem with using PGAP. I did not have this issue with the 5508 version.
I will try to describe it briefly.
Before PGA…
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Starting from cwl v1.1, fields in ResourceRequirement of command line tool no longer accept 'string' type. However when upgrading cwl with cwl-upgrader, these fields are kept and the upgraded cwl cann…
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Updating this ticket with the latest histologies:
There are some minor issues with the merged histologies file that we can discuss in the next toolkit meeting. Using the latest merged histologies f…
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Hello there,
we are facing an issue with a workflow that is using this type of CWL file:
the problem appear only when i'm using "InlineJavascriptRequirement" with this kind of javascript expression…
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Spaces present in output file names results in error.
cwl file: touch.cwl
```
cwlVersion: v1.0
class: CommandLineTool
requirements:
- class: InlineJavascriptRequirement
- class: ShellCo…
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In https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/conditionals/cond-wf-002.cwl and https://github.com/common-workflow-language/cwl-v1.2/blob/1.2.1_proposed/tests/condit…
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Fails with testing dataset after running:
wget https://github.com/ncbi/pgap/raw/prod/scripts/pgap.py
chmod +x pgap.py
./pgap.py --update
./pgap.py -r -o mg37_results test_genomes/MG37/input.yaml…
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Hi,
i'm using PGAP for the first time. I try running the pipeline with mg37 test_genome and encounter the following issue: permanent fail.
d-i89-241-243:~ s4251484$ /Users/s4251484/pgap.py -r -o m…