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The Greengenes-style taxonomic lineage file format is widely used in microbiomics, such as QIIME 2, GTDB-tk, MetaPhlAn, etc. It would be good to let the user append taxonomic annotations of contigs by…
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Hi,
First, apologies if this is not the best place to ask this question. I'm doing gene annotation for a non-model rodent, and I have tried several approaches:
1. BRAKER2: with a large protein dat…
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I want to use metawrap to bin, and i have already finished binning with concoct maxbin2 and metabat2. This is my bin results folder:
`$ tree INITIAL_BINNING/*_bins
INITIAL_BINNING/concoct_bins
├─…
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I've been trying to run Dyno so as to proceed to lineage inference from a public dataset.
I've done the preprocessing to reshape de data to the required input format (counts and expression matrices…
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Hi All,
we at ING are working integrating SAC with our internal data analytics platform where Atlas is one of our main components for storing various kinds of metadata, metrics, quality information,…
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We currently use "Slim CI" for this project, which (in theory), only runs models that are *affected* by a PR in CI. The intention here is that we can save time and money by just running the stuff that…
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first issue! :D
thanks for [providing the script as per #71 in kraken2](https://github.com/DerrickWood/kraken2/issues/71) - I've tried using this but can't seem to get it to roll out.
For ```Kr…
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- [x] I have searched open and closed issues for duplicates
- [x] I am submitting a bug report for existing functionality that does not work as intended
- [x] I have read https://github.com/sign…
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Relevant reference on the topic: [Airflow DAG versioning](https://cwiki.apache.org/confluence/display/AIRFLOW/AIP-36+DAG+Versioning)
**Problem**:
As users develop data pipelines, they can introduc…
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### Hi, when I run this code below:
import sys
import cellrank as cr
import scanpy as sc
import pandas as pd
sc.settings.set_figure_params(frameon=False, dpi=100)
import numpy as np
cr.settin…