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Hi,
I am analyzing multiple bacterial genomes with very little programing knowledge. The way tormes parses and summarizes the results from all the genomes in tabular files is very helpful!
Tormes ha…
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Allow changing the column names etc using a supplied output format file
Some of the output formats could be:
- [ ] `tcga`: https://docs.cbioportal.org/file-formats/#extended-maf-format. List all…
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Hello,
I made functional annotation associated with nitrogen metabolism for metagenomic data using KofamScan(https://www.genome.jp/tools/kofamkoala/) ,NCyc and eggnog-mapper. But these results are …
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Error introduced in https://github.com/ebi-gene-expression-group/atlas-annotations/commit/8f0da818153dfb04139e896638b934c87a08767c
The following `println` statement in `src/Directories.sc`:
```
p…
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The RGD entry in https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml currently looks like:
- database: RGD
name: Rat Genome Database
synonyms:
- RAD
- RGDID
…
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Hi,
After successfully using gff3_QC, gff3_fix is giving me the following error:
```
(genometools) [safiand@login001 grass]$ gff3_fix -qc_r test.txt -g turneri_annotation.gff3 -og new_corrected.g…
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Hello, first off I'd like to say thanks for all the work you put in for comparing and benchmarking these models!
I am trying to generate the input training and test data for the multi resbind model…
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PEPATAC with looper failed with the latest looper and eido
here is the error message:
```Looper version: 1.4.0
Command: run
/home/bx2ur/.local/lib/python3.8/site-packages/divvy/compute.py:150…
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Hi @linnabrown , @yinlabniu , @AaronAOliver
Thank you for a great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction. My o…
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Currently, many simulation options are an all-or-nothing operation that affect the entire community.
Adding these are annotations within the community definition would provide valuable fine-grained…