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Hi,
I am trying to find a norm peaks to do ATACqPCR primer using your tool. Concerning my differential region that I have to test the tools work fine. But when I am trying to do find norm peak it …
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Hi.
I follow vignette with my bam file.
However, When I entered **annotateRangesWithTxDb (fds, txdb=txdb, orgDb=orgDb)**, i got warning and error message :
403 genes were dropped because they h…
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phylogenetic trees:
- phylocanvas.gl !!! [example](https://www.phylocanvas.gl/examples/select-leaf-nodes.html)
- figtree home [home](https://github.com/rambaut/figtree.js) [example](https://rambau…
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Hi EVM team,
Thank you very much for this wonderful tool.
I am annotating a plant genome (~500 Mb), that has ~50% repeats that was masked by RepeatMasker. For annotation, I used a soft-masked geno…
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Cell by bin
Visualize in higlass
Cell by peaks (in BED + snap files)
Annotated peaks (genomic intervals) per cell
Genome-wide (not necessarily tied to a gene)
Our Pipelines:
- [ ] We need to cre…
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Hi!
I am trying to annotate some genomes from a custom database using --proteins and a gbk file with trusted annotations from an NCBI-annotated genome (let's call it X). However, some of the annota…
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I downloaded the latest version of starfusion singularity image
star-fusion.v1.11.1.simg
Then used the following command to generate a Rat novergicus library with the latest ensembl references a…
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Hey @elizabethmcd good afternoon!
I have a very newbie issue related to my results: I run the summarize metabolism option on my isolated genomes, and now I´m interested on checking the protein seque…
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Hi,
I see that CLAP is designed to run on eukaryote genomes.
How to adapt it to run on bacteria?
I changed `make_annotation.sh` by adding species _escherichia_coli_k_12_ and adjusted ftp site and…
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Dear Brian,
I am annotating a lizard genome by combining GeMoMa (Homology-based), AUGUSTUS (ab initio prediction), and StringTie (transcription-based). Since the transcription was from only uterus …