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elizabethmcd
/
metabolisHMM
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
GNU General Public License v3.0
17
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5
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Updated python issues
#60
susheelbhanu
closed
2 weeks ago
1
single-marker-phylogeny > view on the tree
#59
elizabethmcd
opened
2 years ago
0
Check for - in genome names
#58
elizabethmcd
opened
2 years ago
0
Error running summarize-metabolism
#57
bbaker567
closed
2 years ago
2
SciPy Package Dependencies and Updates
#56
elizabethmcd
opened
2 years ago
0
markers and phylogeny
#55
elizabethmcd
opened
2 years ago
1
Retrieving protein-coding sequence from a giving function
#54
Streptomyces1
opened
3 years ago
1
Hmmsearch crashes at search-custom-markers
#53
nikobiota
closed
3 years ago
3
Fasta formating
#52
Streptomyces1
closed
3 years ago
3
Demo dataset
#51
elizabethmcd
closed
4 years ago
1
TOL DB
#50
elizabethmcd
closed
4 years ago
1
genome names cannot contain dashes?
#49
taylorreiter
closed
4 years ago
2
dev branch
#48
elizabethmcd
opened
4 years ago
1
Include missing files in sdist
#47
thatch
opened
4 years ago
0
Missing files in sdist
#46
thatch
closed
4 years ago
3
Create a conda release
#45
vinisalazar
opened
4 years ago
12
make-heatmap.R script location?
#44
Binvir
closed
4 years ago
3
fixes
#43
elizabethmcd
closed
4 years ago
0
Kofam search yields TC bit threshhold error
#42
morgvevans
closed
4 years ago
2
The directory of curated metabolic markers could not be found.
#41
sarah872
opened
4 years ago
22
no hmmersearch for summarize-metabolism
#40
Thexiyang
closed
4 years ago
10
version numbers
#39
elizabethmcd
closed
4 years ago
1
Documentations and figures
#38
elizabethmcd
closed
4 years ago
1
Additions to create-genome-phylogeny
#37
elizabethmcd
closed
4 years ago
2
prodigal quiet
#36
elizabethmcd
closed
4 years ago
1
installation instructions
#35
elizabethmcd
closed
4 years ago
1
R script options
#34
elizabethmcd
closed
4 years ago
2
iTOL options
#33
elizabethmcd
closed
4 years ago
0
single marker corresponding tree making
#32
elizabethmcd
closed
4 years ago
1
heatmap row order
#31
elizabethmcd
closed
4 years ago
0
programs installed
#30
elizabethmcd
closed
4 years ago
0
plotting option
#29
elizabethmcd
closed
4 years ago
0
iTol metadata files for phylogeny workflows
#28
elizabethmcd
closed
4 years ago
0
check for markers download
#27
elizabethmcd
closed
4 years ago
0
connect to kofamkoala
#26
elizabethmcd
closed
4 years ago
3
output format
#25
elizabethmcd
closed
4 years ago
0
Option for corresponding tree from single phylogeny
#24
elizabethmcd
closed
4 years ago
0
Missing markers for summaries
#23
elizabethmcd
closed
4 years ago
4
Reformatting fasta files
#22
elizabethmcd
closed
4 years ago
0
Print genome if missing more than # of markers for phylogeny
#21
elizabethmcd
closed
4 years ago
0
Metabolic Summary heatmap
#20
elizabethmcd
closed
4 years ago
3
Major Release Tasks
#19
elizabethmcd
closed
4 years ago
0
Documentation
#18
elizabethmcd
closed
4 years ago
0
Any Pathway > Visualization
#17
elizabethmcd
closed
4 years ago
0
Metabolic Summary > Visualization
#16
elizabethmcd
closed
4 years ago
0
Concatenate script
#15
elizabethmcd
closed
4 years ago
1
refseq hits
#14
elizabethmcd
closed
4 years ago
1
tfdA test case
#13
elizabethmcd
closed
4 years ago
1
Presence/absence among a given set of genomes
#12
elizabethmcd
closed
4 years ago
2
Directory names
#11
elizabethmcd
closed
4 years ago
2
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