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Hi Alex,
I made my genome indics using an older GTF file back in last year. Since then the GTF file has been updated with several changes. Just wondering would that make much difference to the al…
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## Research Task
Use this template to create issues that represent small chunks of work (.5 - 2 days) that stand alone, or represent incremental work as part of an [Epic Issue Template](https://git…
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**Referenz**
Hallo liebe Mitmenschen,
Auf der Webseite [gtfs.delfi.swingbe.de](https://www.gtfs.delfi.swingbe.de/) fuehrt ein **Report**-Link zur Auswertung vom Delfi-Datensatz im GTFS-Format.
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I'm trying to build the CTAT genome lib because the plug and play resources for Fv1.9 do not contain the genome lib build with gencode-v38 which is use during my pipeline.
I tried to generate the lib…
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This is the error report I got:
```
Yikes, the program threw an unexpected exception!
Hopefully a complete report has been saved to transitfeedcrash.txt,
though if you are seeing this messag…
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https://github.com/tgen/jetstream_resources/blob/6ffe2681fef962a8ba0881842aaf1aafd9b4469b/shared_resource_creation_scripts/create_gene_model.sh#L247-L258
We grab the value in column 10, e.g. $10, b…
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Hello, all, I try to use ggbio to create a lncRNA database(http://www.lncipedia.org/downloads/lncipedia_3_0.gtf), but I got a warning like that ""gap" is not matching to following arbitrary model term…
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I am running BRAKER3 with singularity.
I always get an error in the Augustus step. This is what the error looks like:
AUGUSTUS_CONFIG_PATH/species (in this case /usr/share/augustus/config//spe…
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**Art der Abweichung**
Laut GTFS-Referenz sind für die Eigenschaft platform_code nur die Identifier anzugeben, nicht hingegen jedoch Worte wie "Gleis", "Pos", "Bstg".
Dies ist jedoch für einige St…
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```
The routes.txt file in GTFS has a column for route short and route long names.
The converter populates route_short_name and leaves route_long_name empty. It
might be desirable to populate long n…