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I tried the new allel finding feature. The concept is really cool and better still; very important, so props for taking it up. My experience running it was not that good though. I ran it on a bunch of…
krdav updated
8 years ago
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Hey,
is there any chance to run the importFromIMGT script from windows? Using `mixcr importFromIMGT` gives `Error: Expected a command, got importFromIMGT`.
Probably difficult, as it is a shell scrip…
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Hello all,
I was wondering how OptiType handles ambiguous results. I would expect that the solver returns something along the lines of "no single best solution found" or similar. Or will all best res…
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First of all, what a great tool!
I have been unable to find any contact information @hannespetur, but would like to request a feature. Right now there are only a limited number of alleles available as…
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Hey,
running mixcr importFromIMGT starts the script. I get to agree to the IMGT terms. Then it will ask me to select a species. However, it shows me an error before giving me the species options that…
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Hi,
I see the list of the references of the multiple sequence alignment here:
http://www.ebi.ac.uk/ipd/imgt/hla/nomenclature/alignments.html
May I ask are the alleles in this list part of the human re…
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One thing that the C++ definitely needs is a option to specify the location of the germline sequences, which is in Duncan's modified version of ighutil as a `--vdj-dir` flag.
@psathyrella, mind if w…
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Hi,
I am currently running the HLA typing software portion of the MHC-PRG package. I set up the commands as described in the github descriptions however when I ran the program, I received this error:…
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**[Original report](https://bitbucket.org/kleinstein/changeo/issues/68) by Jason Vander Heiden (Bitbucket: [javh](https://bitbucket.org/javh), GitHub: [javh](https://github.com/javh)).**
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I am trying to run `mixcr align --library local -s musmusculus ...` after I have imported from IMGT. I get following error message now:
```
Exception in thread "main" java.util.zip.ZipException: inva…