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Hi,
We spoke a while ago about adding [PHATE](https://github.com/KrishnaswamyLab/PHATE) and eventually [MAGIC](https://github.com/KrishnaswamyLab/MAGIC) to Seurat. MAGIC has just been submitted to …
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I'm having some trouble with the "preprocessing" script and not able to generate the plot at the end.
I'm using my own data, loading in .ped and .map files and converting them with `snp_plinkQC()`…
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##### Orange version
3.15.dev
##### Expected behavior
Rank works reasonably fast on computers with sufficient RAM.
##### Actual behavior
Rank is slow on some machines. It worked fine …
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Hi again! @wenbostar
Another question for you : How to export results of intermediate processes from metaX ?
For my case, which is quite complicated due to a cross-species analysis demand, I need …
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Hi,
We spoke a while ago about adding [PHATE](https://github.com/KrishnaswamyLab/PHATE) and eventually [MAGIC](https://github.com/KrishnaswamyLab/MAGIC) to Scanpy. MAGIC has just been submitted to …
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Hello,
thank you for the great work.
I'm trying to impute missing values on data different than the training set, by initializing a new imputer object liko so:
imputer_test = Midas(layer_st…
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Hi,I have two questions about data-processing 0f metabolomic data,as follows:
1.Can we compare intensities of different featrues in the same sample?Whether different features intensity are comparable…
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That seems backwards: the wrapper usually knows about class it wraps, not the other way around. Is there a way to just combine DataLoader and DataLoaderWrapper into one class? I don't think we ever wa…
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Hello,
Compared to population based HiC data, single cell HiC data are very sparse and hence good imputation methods are needed to fill in the contact matrix.
In line with that, can I use PHATE dir…
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In `Rmagic::magic()` the documentation reports that the default number of principal components is 20, but the default in `magic()` is set to 100.