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- [x] Write notebook
- [x] Run notebook locally & git push - for cell output rendering
https://docs.bacalhau.org/examples/molecular-dynamics/openmm/
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## Expected behavior ##
All of the bonds in molecule are imported into the PDB object. At the moment, I'm importing the human polymerase, but I'm getting very few of the bonds to actually come throug…
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Most routines will automatically be GPU friendly, simply by leveraging torch's GPU structure. Some will not, however. In particular, I've gotten complains from plotting infrastructure, such as `tdg.…
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## Bug report
`ParamsMap.put` updates camal case name and hypen name simultaneously, but `ParamsMap.copyWith()`
does not work with a `Map` containing only camal case keys.
### Expected behavi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/montilab/CaDrA
Confirm the following by editing e…
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could openmm run rigid body simulation?
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### Bug summary
I am getting the following error after all the calculations are done. There seems to be some issue with the parsing the result. Is there any way to resume from where the process ended…
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Hi everyone,
I want to use PICLas for simulating the interaction of ions, electrons, and neutrals in a hot plasma where I want to investigate the interaction of these particles, possible chemical r…
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I noticed some issues and typos that need to be fixed in the proof stage or the next revision. To keep track, we can add them to this issue as comments
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Hi!
Very delighted to use your plugin. It is simply awesome. I could run the tutorials without any error. But when i tried to build my own systems for RBFE , the simulation crashes with an error " Pa…