-
Hi there,
I am trying to run the pipeline on some older fastq files (circa 2010s) using the docker profile. The reads for the files are relatively short at ~75bp. Following previous advice from Abh…
-
### Description of feature
I am creating a new pipeline and just became aware of nf-schema (https://nextflow-io.github.io/nf-schema/latest/). The suggestion has come up to add a code comment above th…
-
[nextflow.log](https://github.com/KijinKims/VirPipe/files/13279293/nextflow.log)
Hi KijinKims
I tried to run your pipeline but haven't been succesful yet, it keeps crashing and I'm not even sure…
-
Dear Team,
First, thank you for providing this nice method! We are encountering an issue when using the bleed correction function on the CytAssist capture area, which has approximately 14,000 spots (…
-
My workflow keeps failing at the reference_assembly:map_reads step:
```
ERROR ~ Error executing process > 'pipeline:reference_assembly:map_reads (1)'
Caused by:
Process `pipeline:reference_a…
-
Hi, I am getting the following error while running this pipeline:
```
nextflow run nf-rnaSeqMetagen -profile standard --mode run.FilterClassify --data ~/Documents/KR_Project/combined/ --genome ~/D…
-
**Describe the bug**
When running the pipeline for a second time with the `-resume` option, the publish processes always run and are not cached.
**To Reproduce**
Steps to reproduce the behavior:
…
-
## Bug report
In certain situations, the workflow.onComplete handler will not run. When using `error`. For example, in the following script the line "OnComplete: Ending Workflow" should appear in …
-
Hi @emi80
I have been using grap-nf [10fde600ff] for long time with singulairty 3.6.3 and nextflow 20.10.0. Recently, I had to change to a new HPC environemnt. So, I donwloaded the grape-nf [93be7…
-
I get the below error when running on a HPC with 120 cores and 500GB RAM. I read that 137 relates to memory so I increased the allocation to 250G using the -c parameter and a mem.config file, as sugge…