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- [x] This is a bug report
- [ ] This is a feature request
- [x] I searched existing issues before opening this one
### Expected behavior
Expected behaviour that it will recognise the ARGs in li…
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The Picard tasks are dying with `OutOfMemoryError` but are not being retried when Nextflow is set up to do just that.
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I was trying to run this pipeline as described, using the Docker container, but get this error:
```
$ ./nextflow run cbcrg/piper-nf -with-docker
N E X T F L O W ~ version 0.26.4
Launching `cbc…
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Hi again.
Today, I installed metaGT on our machine using `git clone`.
After installing it, I tried to test the minimal dataset described in README - 'Quick Start' - 4, but it did not work.
``…
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### Description of feature
I have tried to run with one sample. It seems Taxonomy classification (GTDB-Tk) didn't work. Could you please advise whether we need to download any database?
Thanks a l…
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## Description of the bug
Process NFCORE_RNASEQ:RNASEQ:FASTQC_UMITOOLS_TRIMGALORE:FASTQC (RbohA_KO) terminated with an error exit status (1)
Without usefull traces and logs.
## Steps to reprodu…
EFEXP updated
3 years ago
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I was working on integrating automatic email-ing of workflow output files, and then I noticed my dashboard wasn't being updated anymore (when I run a workflow, it doesn't show up in tower dashboard **…
daudn updated
3 years ago
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### Description of the bug
> while running the Sarek 3.3.1 pre-processing step on a tumor-normal pair, the pipeline completed successfully, but it only generated the bam file for the normal sample
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Since DSL2, Nextflow scripts have been limited to 64KB. I can't remember the exact reason but I recall that it has to do with the Groovy engine that is used to evaluate scripts. GroovyShell is used fo…