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Hi again Amaro,
Thanks for all your help so far! I've now successfully run deTiN, but I ran into a few errors with missing input fields (not mentioned on the Wiki) that I figured I'd report here.
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Hi,
I am running into previously reported segmentation fault errors using the lumpy-sv 0.2.14a install from Anaconda/bioconda.
Interestingly, **some of the samples complete successfully and with…
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Just installed PennCNV 1.0.3 on my system (OSX 10.11.5, perl 5.14.2). Functions can be called without a problem, but when calling detect_cnv.pl, I receive a "Segmentation fault: 11" error. I heard tha…
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Dear madam/sir,
I have recently tried to use ISOWN, and I was getting a seqmentation fault error when doing the first annotations. I found out that this happens when the software is using qpipeline…
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Hello,
I am getting this error while using the segment function
```
(virtualenv_python_2.7.5) [apandey@papr-expanded01 ]$ cnvkit.py segment MAOC00944-3-6.cnr -o MAOC00944-3-6.cns -t 1e5 -p 1
S…
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Hello Konstantinos,
I am working brain tumor segmentation by using original deepmedic on BRATS2015 database. I noticed that in the boundary of label 1 (Nercosis) and label 2 (edema), the probability …
pykao updated
6 years ago
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Can't download pre-trained models, the link seems to be broken or access is diabled.
![image](https://user-images.githubusercontent.com/18334824/43168020-61e3250e-8fa4-11e8-81dd-1983e11f6779.png)
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Hi
Could you please comment on the design choice of not outputting probability map for background? I noticed that you are using a hard threshold of 0.5 to set a tissue as background. This may becom…
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I'm trying to run PureCN.R after Coverage.R and I'm getting a cryptic error (see at the very bottom) that I can't debug. I notice there's a lot of warnings for low coverage but I'm not sure if this is…
ghost updated
6 years ago
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hi @ellisdg
I use LGG & GBM to generate training and validation data.
I use the pre-trained model provided. isensee_2017_model.h5 or tumor_segmentation_model.h5
I run the predict.py
But the predi…