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getzlab
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deTiN
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
BSD 3-Clause "New" or "Revised" License
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Installation error
#39
shashwatsahay
opened
1 month ago
0
aSCNA segmentation file from Canvas
#38
jonStewMitch
opened
2 years ago
0
Error message
#37
cyanophage
opened
2 years ago
0
updated py module requirements info for installer
#36
briandiamondage-sema4
closed
2 years ago
2
Easy Question: Is "alt_allele_in_normal" from Mutect1 is similar to "normal artifact" in Mutect2(GATK4)
#35
npatel-ah
closed
3 years ago
2
error message "can't set using a multi-index" when running example data
#34
jp3117
opened
3 years ago
2
gatk except AllelicCNV
#33
jeongmeani
opened
3 years ago
0
More robustly handle sample names in indel VCF headers
#32
julianhess
opened
3 years ago
1
fix uninitialized variable bug when using only ssnvs
#31
jett-crowdis
closed
3 years ago
0
error while generating ExAC file
#30
MariusGheorghe
closed
3 years ago
1
Validation data on SRA
#29
probalica19
closed
3 years ago
2
Fix bug in cluster_segments found while testing on CPTAC data. This …
#28
cbirger
closed
3 years ago
0
Running with SSNV data only
#27
jonMitchGEL
opened
4 years ago
2
n_probs argument requirement in aSCNA segmentation file:
#26
heyudou
closed
4 years ago
1
Fails without INDEL data
#25
lDesiree
closed
4 years ago
4
Does deTiN support to accept SSNV and SCNA data from callers other than Mutect1 and AllelicCNV?
#24
lindaxiang
closed
4 years ago
4
TypeError: object of type 'numpy.float64' has no len(): len(self.ascna_based_model.centroids)
#23
lelagina-broad
closed
4 years ago
1
AttributeError: 'list' object has no attribute 'isnull'
#22
nukaemon
closed
5 years ago
4
How can we get the value "tau" in aSCNA segmentation file?
#21
b-niu
closed
5 years ago
2
Which version of GATK for CallCNLoHAndSplits
#20
ghost
closed
5 years ago
5
dbsnp/cosmic.vcf
#19
ghost
closed
5 years ago
1
Results
#18
MagdalenaZZ
closed
5 years ago
2
Description of outputs
#17
MagdalenaZZ
closed
5 years ago
2
generating inputs with GATK4
#16
sraorao
closed
5 years ago
4
Missing required input fields
#15
erleholgersen
closed
6 years ago
3
ExAc pickle file for hg38
#14
erleholgersen
closed
6 years ago
12
AllelicCNV input files
#13
erleholgersen
closed
6 years ago
4
which version of GATK should i use?
#12
haoziyeung
closed
6 years ago
2
Create LICENSE
#11
amarotaylor
closed
6 years ago
0
updating README
#10
amarotaylor
closed
6 years ago
0
Dec branch
#9
ekofman
closed
6 years ago
1
Create LICENSE
#8
amarotaylor
closed
6 years ago
0
updating defaults
#7
amarotaylor
closed
6 years ago
0
debugging aSCNA plot and aSCNA likelihood formula
#6
amarotaylor
closed
6 years ago
0
updating BIC criteria to delta > 10 and RSS over hets not segments
#5
amarotaylor
closed
6 years ago
0
fixing typo
#4
amarotaylor
closed
6 years ago
0
removing empty functions and updating comments
#3
amarotaylor
closed
6 years ago
0
adding indel support
#2
amarotaylor
closed
6 years ago
0
fixing read me install section
#1
amarotaylor
closed
6 years ago
0