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WGLab
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PennCNV
Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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Error: can't undefined value as an ARRAY reference at detect_cnv.pl
#121
SamGreen52
opened
3 weeks ago
1
compile_pfb.pl running time issue
#120
zuyan413
opened
1 month ago
3
compile_pfb.pl issue
#119
taeiseul
closed
3 months ago
0
Inquiry Regarding Suitability of PennCNV for CNV Detection with Low-Resolution Array Data
#118
jeff665547
opened
3 months ago
1
Compilation issues
#117
MrDotOne
opened
4 months ago
4
Create hg38 GC model
#116
BioinfoRDX
closed
4 months ago
2
Could the number of SNP probes be more than the length of the called CNV (bp)? Image attached
#115
prans-neuro
opened
5 months ago
0
Confidence score updating when merging calls in clean_cnv.pl
#114
JinhanZhu1
closed
6 months ago
2
How do we get the imm_regions file?
#113
prans-neuro
opened
7 months ago
1
Processing the same coordinates on Illumina OmniExpressExomeBeadChip
#112
aburayaki
opened
8 months ago
0
.hmm file
#111
DrFakhar
closed
11 months ago
7
PennCNV-Affy substep 1.3 cluster generation for chrX when all samples are female?
#110
Lydia-King
opened
1 year ago
0
detect_cnv.pl -test vs detect_cnv.pl -validate
#109
rodrigopsav
opened
1 year ago
0
Error: input to reg_linear() should be two reference to arrays
#108
sahwa
opened
1 year ago
0
Output file sometimes huge, sometimes small, regardless of number of samples???
#107
Jolleboll
opened
1 year ago
0
Two questions: 1) filter first or merge first, 2) B allele freq figure for duplication CNVs
#106
xiaoqing-liu
opened
1 year ago
2
generate_affy_geno_cluster.pl no SNP or CN markers
#105
sophie-03
opened
1 year ago
0
PennCNV compilation error
#104
anvarodi
opened
1 year ago
0
Confidence score calculation
#103
sherrybio
opened
1 year ago
1
HMM and PFB files of Brassica napus 60K Illumina InfiniumT SNP array
#102
zhenling0628
opened
1 year ago
0
GenomeStudio CNV Table Export
#101
jng2
closed
1 year ago
2
Generating signal intensity for axiom arrays
#100
sophie-03
opened
1 year ago
1
Trio-based CNV detection error: no snpdist defined!!!
#99
hezht3
opened
1 year ago
0
Singularity use
#98
lgmgeo
closed
1 year ago
4
non-European populations GC-waves models and ASA chip
#97
Captain-Pam
opened
1 year ago
11
Missing files from affymetrix website
#96
e-sollier
closed
1 year ago
4
Question: Can PennCNV differentiate homozygous and heterozygous CNV calls?
#95
vikrantsingh1
closed
1 year ago
2
PFB and Intensities file number of probes (rows) mismatch
#94
dvirsegal
opened
1 year ago
2
Signal values for 0 CNV region
#93
psychrb
opened
1 year ago
4
LOH / state4,cn=2 is never called
#92
Nicolai-vKuegelgen
closed
1 year ago
12
Docker to Singularity root user access
#91
joshuamschmidt
closed
1 year ago
1
compile_pfb.pl issue
#90
sophie-03
opened
1 year ago
3
visualize_cnv.pl
#89
psychrb
opened
1 year ago
5
genomic_wave.pl sub trainGCModel subsets lrr values differently to method described in paper
#88
joshuamschmidt
opened
1 year ago
1
Documentation links to two different docker images
#87
DanielEWeeks
opened
2 years ago
1
Compile pfb Bovine data
#86
rodrigopsav
closed
2 years ago
2
question about calling CNV with tumor and normal-pair sample
#85
lizhan96
opened
2 years ago
0
Hmm file for illumina cytoSNP 850K array
#84
Sneha-bioinfo
opened
2 years ago
3
empty GC model files
#83
NTNguyen13
opened
2 years ago
3
Running PennCNV in parallel
#82
sophie-03
closed
1 year ago
1
Creating individual log and BAF input files
#81
sophie-03
closed
2 years ago
1
Argument "NA" isn't numeric in numeric gt (>) at ~/detect_cnv.pl line 1632.
#80
shaoxiong2588
opened
2 years ago
1
clean_cnv.pl output - Empty file
#79
mrinalmishra
closed
2 years ago
1
GCmodel file for Bostaurus
#78
oshintogla
closed
2 years ago
0
RuntimeError Usage: ReadCHMM(filename)
#77
Apprentice2
opened
2 years ago
3
visualization error
#76
nitzzzzzzz
opened
2 years ago
0
Visualization_error
#75
nitzzzzzzz
closed
2 years ago
0
Unable to get genotypes for all markers
#74
chopraamhk
opened
2 years ago
1
How can i get Hmm file for affy500k array
#73
zhangjsyeah
opened
2 years ago
1
Added --lastchr arg to help for detect_cnv.pl
#72
tjjjohnson
closed
2 years ago
1
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