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WGLab
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PennCNV
Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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hmm file: no such file or directory & the command will not recognise the signallistfile
#71
orla21ocs
opened
3 years ago
0
qcnumcnv
#70
psychrb
closed
3 years ago
1
Error: no snpdist defined
#69
elinejk
closed
3 years ago
4
multiancestry-PFB
#68
psychrb
opened
3 years ago
1
Pedigrees can be used in CNV detection?
#67
YiBenqiu
opened
3 years ago
1
for cyto-snp-850k, which hmml analysis is more appropriate?
#66
heweihuang
opened
3 years ago
2
segmentation fault running PennCNV 2010May version
#65
QidiFeng
opened
3 years ago
5
which one is PennCNV v2010May01 ?
#64
QidiFeng
opened
3 years ago
3
hhall.hg18.pfb and hhall.hg18.gcmodel files not available
#63
aydzhouyuan
opened
3 years ago
3
PFB - PLINK
#62
JFsanchezherrero
opened
3 years ago
2
Error: expect to read B allele after reading A allele , but instead read A
#61
adamluo12
closed
3 years ago
0
How to obtain hmm file for pig 50k in Neogen platform ?
#60
Feng-Zhang
opened
3 years ago
2
Tumor and Normal CEL files?
#59
vymao
opened
4 years ago
1
How can i get Hmm file for affy array
#58
innerpyg-bi
opened
4 years ago
1
Warning when running normalize_affy_geno_cluster.pl
#57
hannanw
opened
4 years ago
2
scan_region.pl
#56
hui-1
opened
4 years ago
2
PennCNV [clean_cnv.pl] WARNING: 3342 lines were skipped due to unrecognizable formats
#55
nikmanadli
opened
4 years ago
0
PennCNV error
#54
hui-1
closed
4 years ago
4
[clean_cnv.pl] Error: the index for SNPs (...) are not found from signalfile
#53
fullrobot
opened
4 years ago
2
hh550.hg18.pfb is missing
#52
wenjia2018
opened
4 years ago
3
GCmodel not in /lib
#51
YannLeGuen
closed
4 years ago
5
No chromosome Y data for genocluster and LRR/BAF- Affy Axiom data
#50
Melb1
opened
4 years ago
11
PennCNV-Affy for Genome-wide 6.0
#49
Taylor95
closed
4 years ago
3
CNV plot margins
#48
andrisvAria
opened
4 years ago
1
How to get a gcmodel without the file gc5Base.txt.gz
#47
scau-drr
opened
5 years ago
3
Unable to locate HMM File for Axiom UKB Array
#46
npatel22526
closed
4 years ago
2
PFB missing markers
#45
andrisvAria
opened
5 years ago
2
Visualization error
#44
andrisvAria
closed
4 years ago
4
custom pfb - duplicate values
#43
andrisvAria
closed
5 years ago
3
RuntimeError Usage: fisher_exact_2sided
#42
vbruat
opened
5 years ago
2
PennCNV for PIG DATA
#41
micpp
opened
5 years ago
1
different CNVs between two execution
#40
Taylor95
closed
5 years ago
2
Error: NO SIGNAL DATA FOUND IN INPUTFILE
#39
KaraLayton
opened
5 years ago
12
Axiom binary to text CELS
#38
Vaidhy-M
closed
5 years ago
3
Suggestion for running compile_pfb.pl with 8K samples
#37
npatel22526
closed
5 years ago
2
Obtain Population frequency of B allele Axiom_UKB_WCSG
#36
npatel22526
closed
5 years ago
5
PFB file for Illumina GSA array
#35
Taylor95
closed
5 years ago
8
Segmentation fault-detect_cnv.pl
#34
moshl
closed
5 years ago
1
Error: Found probeset A allele but not B allele in generate_affy_geno_cluster.pl
#33
hernanmd
closed
5 years ago
4
Batch effects?
#32
m-gall
closed
5 years ago
2
Error: cannot read from HMM file
#31
argossy
closed
5 years ago
5
can not install PennCNV in Ubuntu 18.04.1 LTS (Bionic Beaver)
#30
Victor0122
closed
5 years ago
1
Unable to adjust LRR values by GC model due to lack of GCWF measure
#29
lee039
closed
5 years ago
0
the output file generated from runex.pl 1 is empty
#28
ZKai0801
closed
6 years ago
7
compile_pfb.pl not working
#27
lsheffield
closed
6 years ago
2
"detect_cnv.pl -validate" shows probability instead of state
#26
heliac2000
closed
6 years ago
3
Fix stack use after scope.
#25
heliac2000
closed
5 years ago
1
WF gc model
#24
m-gall
closed
5 years ago
1
Missing files in lib folder?
#23
KristinaKeuper
closed
6 years ago
1
hmm file for custom designed array--illumina
#22
lirr-lichen
closed
6 years ago
6
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