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In the xcms.group graphical output (Rplots.pdf), plot names correspond to corresponding mz slices. Mz values are written with 2 decimal places (for exemple "164.94 − 164.96").
The problem is that …
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I tried to fill an xset after picking and grouping, but without RT correction. I got the following error, whereas DAY074_007_Q.mzML is the first file it tries to fill.
Steffen is able to asses the d…
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I came across this while looking at how realistic it would be to merge https://github.com/servo/rust-xlib/ and x11-rs. Is there a reason to prefer this repository's glx module over https://github.com/…
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Since unzip might not be available on a cluster environment (as in our case on CentOS) it should be in the requirements.
With zip file import the tool failed with a cryptic error:
```
find: `N…
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Hi, I would use the `do_findChromPeaks()` with the `matchedFilter` algorithm to detect and integrate some mrm data. MRM data are matrix with two columns: retention time and intensity. I would use the …
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Hi. I don't know if this is now the proper place to post suggestions but here it goes.
As have been noted previously (http://metabolomics-forum.com/viewtopic.php?f=25&t=148) the peak range for the in…
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When the density is calculated it is using the default number of points in the returned density.
That means (I think) that the effective bw can never be more than the rtrange divided by the number of…
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If a file with a ',' in the file name is used as input then the link is not created properly (the name of the link is the prefix of the filename up to the comma) and xcms does not find input data:
…
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Dear Santa @lecorguille Claus,
When you use XCMS merger without providing any sampleMetadata file, this means that you have no ready "reference" file for the processing step following xcms analyses…
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@yguitton @jfrancoismartin
Should we propose a merge of all graphs in one or in different pages?