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Hi there!
I'm interested in using celltype for data generated from 10X Genomics pipelines.
I used Seurat to read the 10X data and converted the Seurat object to SCE.
When I tried to use predict_cel…
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sorry..
step 1. binary executes, results in help menu.
```
(scaff10x) [macmanes@premise genome]$ scaff10x
Program: scaff10x - Genome Scaffolding using 10X Chromium Data
Version: 4.2
Usag…
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Hi!
When I try to run preprocess_cds on my data (~50k cells, ~41k genes), it runs for hours without completing, as shown below:
I've checked that my matrix is sparse (I created the cell data s…
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Hi there,
I was running `velocyto run10x -m /ceph/project/....../mm10_rmsk_chrMTGTF.gtf /ceph/project/........../10x_scRNA_704-187_CD8P_GEX /ceph/project/borrowlab/shared/scRNASeq_blood_220210/xen…
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https://docs.microsoft.com/en-us/windows/win32/dxtecharts/using-an-input-method-editor-in-a-game
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**Question❓**
I would prefer not to use MKL. I only use static arrays, and for static arrays MKL does not have any advantage. Can the dependency on MKL.jll be removed or be made optional?
Furthe…
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Hi,
I am new to spatial transcriptomic analysis. I have AnnData from 10x Xenium. Could you please let me know how to generate the input data for dataset.Dataset()?
Thanks.
Bo
Bo-UT updated
11 months ago
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### Extension
https://www.raycast.com/dimagrossman/ssh-manager
### Description
It would be great to have the app (at least optionally) - read ssh hosts lists from `~/.ssh/config` which is the stand…
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ACS and ANZMet Lite dataset templates – Contacts tab - The metadata contact organisation field not appearing (does work in prod 3.10x)
Fix - Modified template records to contain Org contact instea…
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The title is the Q really - I have matched spatial transcriptomics data and bulk RNA-seq data and want to deconvolute the spatial data with the bulk data. Is this possible with cell2location or some o…