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I am basecalling pod5 directories on a PromethION data tower (with 4 A100s), using dorado version 3.
On a pod5 directory with 760GB pods5s, I had changed the CUDA version to either 11.4 or 12 (I c…
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Hi everyone,
It looks like the Dorado basecaller is running properly, but we are not sure where the output file gets located by default.
For example, if we run the basecalling for the POD5 files…
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My dorado 0.3.2 crashed with a compression error in the middle of a run.
I checked the sha sum of all fast5 in the directory and they matches the values in sha512.txt.
Does that mean one of the file…
ymcki updated
9 months ago
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when I run the code:
`python /workspace/nanopore_benchmark/evaluate.py \
--basecalls-path /workspace/startBench/catcaller \
--references-path /workspace/Staphylococcus_aureus_CAS38_02_reference.fas…
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Hello everyone,
I used UNCALLED to enrich a set of genes (repeat masked already) of human genome, a total of 46M in size. When I performed this experiment on a used flowcell with 118 pores usable, UN…
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### What happened?
A bug happened!
--cnv option yields an error with cram files that were generated by wf-basecalling. It requires a cram-bam conversion. Would it be possible to perform wf-human…
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Hello modkit team,
Using your tool, I have been able to create bedMethyl files for my reads mapped onto a metagenomic assembly, and get high level methylation information using `modkit summary`.
…
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Hello,
I am currently having an oligo designed with m6A modifications to serve as a control strand for epinano SVM. The oligo will have an RRACA motif, where the first adenine is m6A and the second…
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While running **cmake --build cmake-build --config Release -j** .... I got followign error. Please help.
@iiSeymour
```
[ 8%] Built target edlib
[ 11%] Built target dorado_allocator_lib
[ 20%] B…
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Hi,
I've made Pod5 files and a pairs list to run with dorado duplex.
However, the output seems to ignore many of the pairs in the list, only performing duplex basecalling on a small fraction of …