issues
search
novoalab
/
EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
107
stars
31
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
EpiNano output issue
#148
TTT16
opened
1 month ago
11
Epinano_Variants.dev.py to Epinano_variants.py
#147
ADelgadoT
closed
2 months ago
0
EpiNano --type g
#146
GregorD96
closed
1 month ago
1
new slide_variants.py
#145
Huanle
closed
10 months ago
1
Error running slide variants
#144
doshirLV
closed
10 months ago
3
Epinano_Variants.py alternative
#143
Huanle
closed
11 months ago
0
install issue: setup.py install for pandas did not run successfully
#142
kenneditodd
closed
12 months ago
1
Nucleotide level mismatch information with Epinano_Variants.py
#141
kaltinel
closed
1 year ago
1
No module named 'sklearn.svm.classes'
#140
matjack2000
closed
2 months ago
3
Epinano delta: pandas.errors.EmptyDataError: No columns to parse from file
#139
kwonej0617
closed
1 year ago
0
Add files via upload
#138
Huanle
closed
11 months ago
0
Add files via upload
#137
Huanle
closed
11 months ago
0
Threads or processor options for slide_variants function
#136
kwonej0617
closed
10 months ago
14
How to run Epinano_Variants.py if the reference genome is large ?
#135
SEVEN-XYCHEN
closed
10 months ago
7
Fail to reproduce your results
#134
rania-o
closed
1 year ago
4
reference to use when testing curlcake data
#133
rania-o
closed
1 year ago
0
No results for the first 20 bases
#132
DelphIONe
closed
1 year ago
1
RRACH requirements
#131
tjprins
closed
1 year ago
4
Epinano with controls?
#130
Whatsacb
closed
1 year ago
9
Epinano differr warning
#129
rania-o
closed
1 year ago
6
FYI for those trying to run (documentation additions)
#128
ArianeMora
closed
1 year ago
3
How to use Epinano_Predict.py
#127
liuqianhn
closed
1 year ago
1
error runing epinano_variants.py
#126
CharlotteAnne
closed
10 months ago
8
Error running Epinano_DiffErr.R on 5mer output from Epinano_sumErr.py
#125
GeoffLyle
opened
1 year ago
1
How to consider a site as modified ?
#124
rania-o
closed
1 year ago
10
Update Dockerfile
#123
hbeale
opened
1 year ago
1
Is it possible to pass multiple features to Epinano_DiffErr ?
#122
katsikora
closed
1 year ago
1
Error with EpiNano Predict
#121
agouru55
closed
1 year ago
3
Migrate to conda?
#120
katsikora
closed
2 years ago
2
Don't jumble column order in Epinano_Predict
#119
lvclark
closed
2 years ago
3
Fix path to sam2tsv in singularity instructions
#118
lvclark
closed
2 years ago
0
about RRACH sites
#117
xieyy46
closed
1 year ago
3
Problem with Epinano_Variants.py
#116
twocata
closed
2 years ago
16
Minimum coverage
#115
rania-o
closed
2 years ago
2
Issues with using Epinano_predict.py - unable to use models to train datasets
#114
BioinfoHub-PeiQinNg
closed
2 years ago
7
Apply EpiNano on DNA data?
#113
hukai916
closed
2 years ago
1
Epinano_variant.py terminated with no error message
#112
BioinfoHub-PeiQinNg
closed
2 years ago
7
Include summed errors calculation
#111
ADelgadoT
closed
2 years ago
1
per 5mer output
#110
soniacruciani
closed
2 years ago
1
How to train the model with single feature, quality score
#109
arthasking123
closed
2 years ago
1
Don't know how to add nanopolish to the enviromental path
#108
acarmas1
closed
2 years ago
12
Epinano_Current is really slow
#107
margot701
closed
2 years ago
1
Issue running EpiNano_Variants.py on docker
#106
cindyeliang
closed
2 years ago
3
Remove test dataset from the relases
#105
lucacozzuto
closed
2 years ago
3
Epinano Variants result
#104
yuxinPenny
closed
2 years ago
6
possible bug when mapping to genome
#103
enovoa
closed
2 years ago
1
undefined columns selected
#102
yuxinPenny
closed
2 years ago
1
Epinano Variants frozen. Not sure why.
#101
niradsp
closed
2 years ago
8
Some problems about RRACH
#100
JeremyQuo
closed
2 years ago
8
Nothing will be generate by Epinano_Variants.py
#99
JeremyQuo
closed
2 years ago
1
Next