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novoalab
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EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
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Problem with environment and docker container
#98
F0nz0
closed
2 years ago
2
Run EpiNano on single gene transcripts
#97
Guoming-Gao
closed
3 years ago
3
polyA tails mapping
#96
Cynthia0411
closed
3 years ago
1
albacore version
#95
aydemiro
closed
3 years ago
1
Stopiteration issue for Epinano_Variants.py
#94
xiaoyanzhang-web
closed
3 years ago
11
Missing sample.per_site.5mer.csv file after Epinano_Variants.py
#93
izl2
closed
3 years ago
12
An error reprot
#92
chaigsh
closed
3 years ago
6
StopIteration on Epinano_Variants
#91
izl2
closed
3 years ago
1
StopIteration
#90
AminaLEM
closed
3 years ago
1
Do you have non-multiprocess version?
#89
Raarbiarsan1899
closed
3 years ago
3
Running Epinano models on m6A modifcations
#88
chrishendra93
closed
3 years ago
4
biological/technical replicates
#87
LeilyR
closed
3 years ago
2
run Epinano_Variants.py failed
#86
xthua
closed
3 years ago
1
Epinano_Current.sh in genome mode throws an error
#85
Zinksulfid
closed
3 years ago
2
Which pre-trained model should be used in Epinano_Predict.py (RNA m6A and m5C)
#84
Stakaitis
closed
3 years ago
1
Epinano predict all bases modify
#83
pabloacera
closed
3 years ago
6
Epinano v1.2 Examples are not working
#82
jjbblue
closed
3 years ago
2
How are replicates handled?
#81
samir-watson
closed
2 years ago
4
Get the profile of modification in serval sample
#80
solaryx
closed
3 years ago
1
Guppy version compatibility
#79
mmiladi
closed
3 years ago
3
I felt confused about the result of sample Epinanov1.2.
#78
solaryx
closed
3 years ago
9
#64 issues forward
#77
aman21392
closed
3 years ago
0
output of sam2tsv not parsed correctly, perhaps?
#76
EmanueleRaineri
closed
3 years ago
2
Limit to the number of reference sequences?
#75
dennisrm
closed
3 years ago
5
Added missing dependencies to run Epinano_Variant.py
#74
kxk302
closed
3 years ago
2
Epinano_Variants.py missing?
#73
kxk302
closed
3 years ago
2
Epinano_Variants.py - problem with multiprocessing?
#72
nemitheasura
closed
3 years ago
5
Dependencies required to run epinano toolset
#71
a-slide
closed
3 years ago
2
Reduce test data size or provide externally
#70
a-slide
closed
3 years ago
2
Unable to plot results
#69
Wardale24
closed
3 years ago
1
Explanation on the Epinano_Variants.py results
#68
yuxinPenny
closed
3 years ago
1
Error: No module named "dask"
#67
yuxinPenny
closed
3 years ago
1
Cannot download the code through the repo
#66
yuxinPenny
closed
3 years ago
1
Problem with the execution of run.sh in make_prediction directory
#65
lionelus
closed
3 years ago
5
Epinano_Current.sh script not running
#64
aman21392
closed
3 years ago
24
sam file creation stuck
#63
aman21392
closed
3 years ago
4
syntax error occur during Epinano_variants command use
#62
aman21392
closed
3 years ago
4
Epinano_Variants tmp file Null end of lines
#61
Celinet21
closed
3 years ago
3
Issue running Epinano_Variants.py
#60
cednotsed
closed
3 years ago
6
long-read data causing memory/batch issue
#59
Celinet21
closed
3 years ago
5
The accuracy of Epinano_Predict.py is 50%
#58
emanlee
closed
3 years ago
5
Filtering dataset
#57
Celinet21
closed
3 years ago
0
Reading step 2 output
#56
bryanmkevan
closed
3 years ago
13
Issue Running Epinano_Variants.py
#55
eliah-o
closed
3 years ago
5
What are the columns of ko_wt_combined.per_site_raw_feature.rrach.5mer.csv
#54
emanlee
closed
3 years ago
1
WT vs KO considerations
#53
Wardale24
closed
3 years ago
2
sam2tsv incompatibility issues
#52
snajder-r
closed
3 years ago
2
explanation on output
#51
DelphIONe
closed
3 years ago
4
Empty .csv files
#50
Wardale24
closed
4 years ago
12
GFF for SK1 fasta
#49
cathoderaymission
closed
4 years ago
3
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