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novoalab
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EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
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GFF for SK1 fasta
#49
cathoderaymission
closed
4 years ago
3
Regarding Epinano command issue
#48
aman21392
closed
4 years ago
8
CSV files for predicting and training
#47
laguda-1996
closed
4 years ago
4
SVM.py index out of bounds
#46
istolarek
closed
4 years ago
9
SK1 Reference Genome
#45
vahidAK
closed
4 years ago
1
Current Intensity Extraction
#44
akk01
closed
4 years ago
4
Memory requirements of TSV_to_Variants_Freq.py3
#43
tleonardi
closed
4 years ago
6
Epinano 1.1: Backtick(`) in deletion values
#42
akk01
closed
4 years ago
1
Epinano 1.1 Strand Information
#41
akk01
closed
4 years ago
4
implement insertion frequency computed from samtools mpileup
#40
enovoa
closed
4 years ago
1
How to get the correct RNA modifications for reverse transcripts?
#39
huiWyuan
closed
4 years ago
3
Yeast: True positive m6A modified RRACH sites
#38
akesarwani
closed
4 years ago
1
Which model and Which column of each model has the modification status?
#37
vahidAK
closed
4 years ago
4
SVM.py gives error
#36
sem0036
closed
4 years ago
9
plot_ROC function in SVM.py
#35
akesarwani
closed
4 years ago
2
General Questions Regarding Using EpiNano
#34
vahidAK
closed
4 years ago
3
per_site_var input
#33
vahidAK
closed
4 years ago
0
The sequence of your cloned fragments downstream of T7 promoter
#32
vahidAK
closed
4 years ago
2
About the SK1 reference genome
#31
xiaoying201355
closed
4 years ago
0
Error when running fast5ToEventTbl.py
#30
vahidAK
closed
4 years ago
9
Empty per-read and per-site file
#29
vahidAK
closed
4 years ago
14
Curcake SRR8767348; ignoring read without sequence
#28
akesarwani
closed
4 years ago
5
Feature Extractions from Million Fast5
#27
akesarwani
closed
4 years ago
1
Modification Status Column
#26
mmingay
closed
4 years ago
1
checking docs
#25
DrOllyGomez
closed
4 years ago
1
SVM features, sequencing depth and modification probability
#24
robinycfang
closed
4 years ago
7
some problems in per_read_var.py script
#23
huiWyuan
closed
5 years ago
0
How to detection of RNA modifications for the reverse transcripts?
#22
huiWyuan
closed
5 years ago
0
Which reference sequences should be used to RNA mapping
#21
huiWyuan
closed
5 years ago
0
which fast5 for fast5ToEventTbl.py?
#20
huiWyuan
closed
5 years ago
0
Some questions about using Epinano
#19
huiWyuan
closed
5 years ago
3
adding a splitting step for TSV
#18
lucacozzuto
closed
5 years ago
0
Detection of 2′-hydroxyl modifications in direct RNA-seq data
#17
s-t-calus
closed
4 years ago
1
Examples are not working
#16
axgraf
closed
4 years ago
6
missing shabang in different scripts
#15
lucacozzuto
closed
5 years ago
1
Homogenise python versions
#14
lucacozzuto
closed
5 years ago
1
which input fast5
#13
sdwien
closed
5 years ago
6
per_read_var.stats.py script
#12
sdwien
closed
5 years ago
2
minimap2 step: input and reference files
#11
sdwien
closed
5 years ago
1
Does the method suitable for other species?
#10
tengfeixiaozhu
closed
5 years ago
4
Example unm_example_fast5/mod_example_fast5 can not be mapped to human genome
#9
zhaijj
closed
5 years ago
0
Could you provide us with a train file you had trained
#8
iaunicorn
closed
5 years ago
3
How to get my own train file
#7
iaunicorn
closed
5 years ago
8
Unable to run fast5ToEventTbl.py
#6
hygine
closed
5 years ago
3
Hello
#5
ishaaq34
closed
5 years ago
7
Error encountered with trimming fastQ files
#4
amy1847
closed
5 years ago
4
It seems that there is a small flaw in "per_site_var.py"
#3
weir12
closed
5 years ago
2
Calculation of Insertion Frequency
#2
EPKok
closed
5 years ago
3
Question about the type of input file and reference sequences
#1
wlhCNU
closed
5 years ago
1
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