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Hi Felix,
I have a couple of questions regarding Bismark. I'm sorry if they are stupid questions; I am fairly new to WGBS data and Bismark analysis (or to bioinformatics in general).
We are rese…
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Dear users of angsd,
Has any of you tried to get confidence intervals for the FST values given by Angsd?
I think that one way of doing that is to bootstrap over loci, which might be possible using…
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Hi,
I've been trying to follow the quickstart guide to test adVNTR using the sample data provided. However, the following error keeps occuring
Using Theano backend.
WARNING (theano.tensor.blas)…
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I mange applications on a research cluster and our researchers have been reporting issues with execution speed of your software on out cluster.
I have just run through the first step of the tutori…
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This is regarding _Sequence Alignment/Map Format Specification_ (2022-08-22).
§ 1.3 "The header section" lists valid values for read group platforms:
> Valid values: `CAPILLARY`, `DNBSEQ` (MGI/B…
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While most human population genomics datasets are now able to achieve >30x sequencing coverage on the regular, for a lot of non-model organism studies its becoming more popular to instead use low-cove…
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Hi,
I would like to test your tool. How can create the two input files. I have the results from a cellranger run, i.e. bam, fastq, and count matrix.
Thx
Bernd
baj12 updated
2 years ago
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Hi Liheng,
When I use miniasm to assembly an 100x Pacbio genome, there was an error as follow:
Segmentation fault
What is the matter? I followed the mannual, and the logs were:
```
…
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Hi @alekseyzimin,
While running Masurca (version 3.3.9) I encountered an error:
```
./assemble.sh
[Mon 27 Jul 20:37:59 CEST 2020] Processing pe library reads
[Mon 27 Jul 20:37:59 CEST 2020] A…
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Hi Tobias
I haven't dug closely into the source code for this, so apologies if this question is a bit lazy:
What are the metrics affects by using the optional `--bed` flag for `alfred qc`?
I…