kr-colab locator issues

kr-colab / locator

deep learning prediction of geographic location from individual genome sequences

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issues

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What versions of Tensorflow and Keras is locator tested with?

#40 davidecarlson closed 5 months ago
2
Use case with microhaplotypes?

#39 btmartin721 opened 1 year ago
2
Sample weighting, etc.

#38 clararehmann closed 1 year ago
0
Bump scipy from 1.4.1 to 1.10.0

#37 dependabot[bot] opened 1 year ago
0
sample weighting during training

#36 clararehmann closed 1 year ago
1
Difficulty Installing Locator on Mac or Linux

#35 alexkrohn closed 1 year ago
10
Interested in use for haploid organisms

#34 mhnorris opened 1 year ago
1
Cannot reindex from a duplicate axis??

#33 aglorias opened 1 year ago
0
Query about using locator within marine environments

#32 wpearman1996 opened 2 years ago
1
locator with weights

#31 clararehmann closed 1 year ago
0
Calculating area of window densities

#30 Imogen-D opened 2 years ago
2
Query about validation statistics

#29 Imogen-D closed 2 years ago
1
IndexError: arrays used as indices must be of integer (or boolean) type

#28 nafusco22 opened 2 years ago
1
GPU Out of memory

#27 gaushi opened 3 years ago
2
Question about windows output

#26 snowformatics closed 3 years ago
2
patching install stuff

#25 andrewkern closed 3 years ago
2
freezing tensorflow, numpy, and scikit-allel versions.

#24 cjbattey closed 3 years ago
5
problems running locator

#23 aglorias closed 3 years ago
17
neater code / better plots

#22 clararehmann closed 3 years ago
0
weighted loss

#21 clararehmann closed 1 year ago
1
set h5py version in setup.py

#20 cjbattey closed 4 years ago
0
Error running sample dataset

#19 peterdfields closed 4 years ago
2
more informative error messages

#18 cjbattey opened 4 years ago
0
fixed minor bug with samples coming in from zarr as bytes

#17 andrewkern closed 4 years ago
0
Issue: sample data matches, but sample ordering failed! message still appears

#16 clararehmann closed 4 years ago
1
adding keras verbosity argument

#15 cjbattey closed 4 years ago
0
Verbose argument

#14 alexpiper closed 4 years ago
2
final python plotting!

#13 clararehmann closed 4 years ago
0
Feature request: Ability to use Genotype likelihoods

#12 alexpiper opened 4 years ago
5
tensorflow 2 and windowing

#11 cjbattey closed 4 years ago
1
faster version

#10 clararehmann closed 4 years ago
7
locator plotting with python

#9 clararehmann closed 4 years ago
0
fixed error boolean on summary plot

#8 cjbattey closed 4 years ago
0
removed column renaming from sample data read-in

#7 cjbattey closed 4 years ago
0
matrix input and plotting default changes

#6 cjbattey closed 4 years ago
0
Question relating to the data processing steps (Need Help :(

#5 FritzPeleke closed 4 years ago
1
update readme

#4 andrewkern closed 4 years ago
0
added zarr input option; tweaked some models a bit

#3 andrewkern closed 5 years ago
0
added GRU to models

#2 andrewkern closed 5 years ago
0
CNN structure

#1 andrewkern closed 5 years ago
0