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kr-colab
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locator
deep learning prediction of geographic location from individual genome sequences
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What versions of Tensorflow and Keras is locator tested with?
#40
davidecarlson
closed
3 months ago
2
Use case with microhaplotypes?
#39
btmartin721
opened
10 months ago
2
Sample weighting, etc.
#38
clararehmann
closed
1 year ago
0
Bump scipy from 1.4.1 to 1.10.0
#37
dependabot[bot]
opened
1 year ago
0
sample weighting during training
#36
clararehmann
closed
1 year ago
1
Difficulty Installing Locator on Mac or Linux
#35
alexkrohn
closed
1 year ago
10
Interested in use for haploid organisms
#34
mhnorris
opened
1 year ago
1
Cannot reindex from a duplicate axis??
#33
aglorias
opened
1 year ago
0
Query about using locator within marine environments
#32
wpearman1996
opened
2 years ago
1
locator with weights
#31
clararehmann
closed
1 year ago
0
Calculating area of window densities
#30
Imogen-D
opened
2 years ago
2
Query about validation statistics
#29
Imogen-D
closed
2 years ago
1
IndexError: arrays used as indices must be of integer (or boolean) type
#28
nafusco22
opened
2 years ago
1
GPU Out of memory
#27
gaushi
opened
2 years ago
2
Question about windows output
#26
snowformatics
closed
2 years ago
2
patching install stuff
#25
andrewkern
closed
3 years ago
2
freezing tensorflow, numpy, and scikit-allel versions.
#24
cjbattey
closed
3 years ago
5
problems running locator
#23
aglorias
closed
3 years ago
17
neater code / better plots
#22
clararehmann
closed
3 years ago
0
weighted loss
#21
clararehmann
closed
1 year ago
1
set h5py version in setup.py
#20
cjbattey
closed
3 years ago
0
Error running sample dataset
#19
peterdfields
closed
3 years ago
2
more informative error messages
#18
cjbattey
opened
3 years ago
0
fixed minor bug with samples coming in from zarr as bytes
#17
andrewkern
closed
3 years ago
0
Issue: sample data matches, but sample ordering failed! message still appears
#16
clararehmann
closed
3 years ago
1
adding keras verbosity argument
#15
cjbattey
closed
3 years ago
0
Verbose argument
#14
alexpiper
closed
3 years ago
2
final python plotting!
#13
clararehmann
closed
4 years ago
0
Feature request: Ability to use Genotype likelihoods
#12
alexpiper
opened
4 years ago
3
tensorflow 2 and windowing
#11
cjbattey
closed
4 years ago
1
faster version
#10
clararehmann
closed
4 years ago
7
locator plotting with python
#9
clararehmann
closed
4 years ago
0
fixed error boolean on summary plot
#8
cjbattey
closed
4 years ago
0
removed column renaming from sample data read-in
#7
cjbattey
closed
4 years ago
0
matrix input and plotting default changes
#6
cjbattey
closed
4 years ago
0
Question relating to the data processing steps (Need Help :(
#5
FritzPeleke
closed
4 years ago
1
update readme
#4
andrewkern
closed
4 years ago
0
added zarr input option; tweaked some models a bit
#3
andrewkern
closed
5 years ago
0
added GRU to models
#2
andrewkern
closed
5 years ago
0
CNN structure
#1
andrewkern
closed
5 years ago
0