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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [X] (option…
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Can you please refer to `igraph` instead of `python-igraph` in the below two instances?
https://github.com/search?q=repo%3Aaristoteleo%2Fdynamo-release%20python-igraph&type=code
See https://gith…
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Hello,
I'm trying to use scVelo to compute velocities for genes.
I'm using windows 11 to run the following python code on Visual Studio
```import os
import argparse
import scanpy as sc
import…
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I tried import .loom file generate from Seurat into scanpy for drawing heatmap.
There is a gene "CD34", when I draw in R, it reported as "Warning: Could not find CD34 in the default search locations,…
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Hi Dr. Hu,
I want to reproduce results via SpaGCN in the given tutorial (https://github.com/jianhuupenn/SpaGCN/blob/master/tutorial/tutorial.ipynb). However, I got error “BaseException: Could not c…
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I open this issue because I now encountered several times that conda cannot resolve an `environment.yml` file that I created some time ago (see the example below).
I found that a bit disappointing…
grst updated
8 months ago
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**Submitting author:** @brendapraggastis (Brenda Praggastis)
**Repository:** https://github.com/pnnl/HyperNetX
**Branch with paper.md** (empty if default branch): paper
**Version:** v2.2.0p
**Editor:*…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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### What happened?
In my app I am running into this. On ibis main, I can't repro. I'm guessing this has something to do with the combo of other libraries I have installed, eg pandas and duckdb. I fig…
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Related to [#1977](https://github.com/igraph/igraph/issues/1977#issue-1158121630)
**What is the feature or improvement you would like to see?**
Would it be possible to see the alpha_centrality() i…