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There's an XBB.1 with an insertion S:186insSGG
14 sequences in Denmark, first collection 23rd of November.
GISAID: `ins186SGG`
https://cov-spectrum.org/explore/World/AllSamples/Past6M/variant…
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**Description**
Sub-lineage of: BQ.1.1
Earliest sequence: 2022-10-12, Indonesia --- EPI_ISL_15812519
Most recent sequence: 2022-11-26, Australia — EPI_ISL_15982517
Countries circulating: Australia…
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@rneher compared the method here with [his method](https://www.biorxiv.org/content/10.1101/2022.08.22.504731v2). In general in comparison to deep mutational scanning data, the method here seems to wor…
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[error.log](https://github.com/rvalieris/LCS/files/10031150/error.log)
Getting error while split_fasta_lineages.
Script is not able to separate the linage data from GISAID full data.
**Traceback …
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Didn't know you were making such good use of the little pango_aliasor package - didn't expect that!
I set up partial collapse yesterday to help keep the number of dots limited while teaching what t…
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I totally edited this proposal.
I would like to highlight to Pango team that S:f490P has been actually picked up by plenty XBB.1 and XBB.1.5 lineages.
Here i propose the biggest one:
On Usher is…
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Hi,
If I wanted to run freyja against an older sample, say from before Omicron even, is there a way I can ask freyja to pull the older reference files? Alternatively, is there a way you know of th…
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**Description**
Recombinant of BQ.1.8 -> XBF-like Breakpoint between 22942 and 23018 (S:460-S:486)
Earliest sequence: 2022-01-22, Canada Ontario. EPI_ISL_16730662
Most recent sequence: 2022-02-02, …
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Hi!
I've noticed that ```data/lineages.yml``` hasn't been updated in almost a month. Is this file going to continue to be updated (presumably by running grinch)?
Thanks again for this great re…
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**EDITED**
I will competely rewrite this issue after the mass upload of sequences from Shandong last night.
Initially i proposed it separately in #1565 but then i realize thast this has the same r…