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I copied test data from example_data folder provided by the neoflow.
the input_vcf_list.txt file looks like:
```
experiment sample file file_type
crc_test sample1 /neoantigen2/inpu…
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I tried running the latest version over some timsTOF-pro data containing phospho-enriched peptides
```
diann.exe --f "F:\promec\TIMSTOF\LARS\2024\241002_zrimac\zr_IMAC_100ug_zoom20_1dia_25pepsep_S1-…
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I am trying to analyze XL-MS data analysis. I have got some interlinks and intralinks at FDR 1%. However, the last 2 columns, PEP and PEP Q-value, read NaN. What does this mean? The Q-value is 0. Sor…
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Hi developer,
thank you for this nice tool! I wonder does it limit the size of faa file for input?
when I enter a long sequence, it turned out error like:OSError: [Errno 36] File name too long:
How…
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### Publication and Data Information
Transcriptome analysis of 4 cultivars, all in a database so probably able to be downloaded:
https://www.biorxiv.org/content/10.1101/301358v1
### Additional…
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Dear Mrs. Chabbert,
I contact you as the bios2mds maintainer to submit a bug report. I do so directly per email, as in the bios2mds DESCRIPTION file, I could not find a URL for bug reports.
Belo…
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One point of uncertainty: whether they actually used the two different epitopes (KK10 and KK10-L6M)
for the tetramer (pentamer) sorting, or just the KK10. I cannot make it out from the methods or the…
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I am attempting to convert mztab peptide identification from casanovo to .blib format but have been unsuccessful using BlibBuild. The first error I recieved was:
```
(base) kostrouchov@myip:~$ ./B…
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Hello,
I hope you are well. I just wanted to ask regarding the background of this aforementioned error which is generating when am trying to evaluate an independent test dataset for proteins (max p…
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Hello David,
Thank you for creating and continuously developing this great tool! I wanted a run with PRANK aligner with the run fails even though the test alignment runs successfully. Here is the …
fka21 updated
3 years ago