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## User story
>As a curator
>I want the post uploadscript to work as expected
>So that I can use it
## Acceptance criteria
>Given I have uploaded a dataset using the upload script
>Whe…
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consider this:
```
link-parser amy
linkparser> !morp
linkparser> adsfasdfasdfasdf
```
this attempts the case wit one part (no splits) and with 3 parts (two splits) it never outputs any attem…
linas updated
7 years ago
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@pbuttigieg
I have just inserted the process classes Diet and Human Diet into SDGIO. Their definitions are temporary and will be superseded when the terms will be added to Ecocore.
For now, we h…
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Refactor YAL5-single-codons.R and YAL5-codon-pairs.R to separate concerns within each script [Edward will provide requirements], comment using Roxygen2-style comments, add `testthat.R` compliant tests…
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**Note** that the “memo” for this, final week is motivated by the following prompt:
**Imagine 2051.** Use the materials and medium (or media) of your choice to create one modest object that belongs…
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Hi,
I'm not entirely sure, if this is the right place to discuss this. if not it would be great if someone could point me to the appropriate place.
I'm currently thinking about SBML IO and SBML Id…
tpfau updated
7 years ago
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Reply with your memo as a Comment. The memo should be responsive to this week's readings on AI and its risks with 300–500 words + 1 visual element (e.g., figure, image, hand-drawn picture, art, etc. t…
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I run the following redesign code
# Redesign a Protein
from chroma import Protein, Chroma
chroma = Chroma()
protein = Protein('1GFP')
protein = chroma.design(protein)
protein.to("1GFP-redesign.c…
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I've isolated a bottleneck from our production environment and here's a nifty self-contained benchmark for it: https://gist.github.com/tmcw/1a4e8ee47941454337dc5952dbf90180 (swap require('./') for req…
tmcw updated
11 months ago
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I have CODEX data (1.8m cells x 38 features), where the 38 features are also measured in the expression data (24k cells x 25359 features). I use default parameters for everything, except I've tried a …