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i have noticed in that in the reports files, if there is a base N in the gene feature sequences, it translates to amino acid X.
I was wondering if there is a way to handle those base Ns. is there a …
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Hello,
Recently we have been using hybpiper to assemble thousands of BUSCO single-copy genes from metagenomic reads (2x150bp). The target file is amino acids, and we set the coverage cutoff for spa…
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Hi,
we're currently preparing a submission for the (now discontinued) linked-read sequencing from 10X Genomics. Similar to the current 10X single-cell RNA-Seq datasets, our datasets consists of tw…
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…
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https://mp.weixin.qq.com/s/mnIE55dQbZZa1qDGZIkusQ
ixxmu updated
1 month ago
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Depletion of the paternal gut microbiome alters sperm small RNAs and impacts offspring physiology and behavior in mice – Bethany A. Masson – Brain, Behavior, and Immunity
https://www.sciencedirect.…
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The text of the page "Wastewater in Switzerland" needs to be updated as explained below. The changes have been reviewed by multiple members of the Beerenwinkel's group, including prof. Beerenwinkel.
…
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How do I use BString / BStringSet for values > 127?
PacBio data uses 0:255 ranges for fp/rp/fi/ri tags. I am trying to use BioStrings to work with these tags.
But I ran into trouble, for values …
gevro updated
5 months ago
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Hello all! Thank you for working hard on this excellent piece of software.
I am attempting to run this workflow on a spatial RNA sequencing dataset from AtlasXOmics. After doing much of the pre-p…
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**Project label**
scAgingHumanMaleSkin
**Primary Wrangler:**
Marion & Ami
**Secondary Wrangler:**
Ray
**Associated files:**
Google Drive:
https://docs.google.com/spreadsheets/d/1qhGETqKS5PPg-AVlu…