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Bioconductor
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Biostrings
Efficient manipulation of biological strings
https://bioconductor.org/packages/Biostrings
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feat: Unit Testing and Automation
#114
ahl27
opened
1 week ago
2
Inconsistent formatting in `XStringQuality` objects
#113
ahl27
opened
1 week ago
0
fix: Issue #65
#112
ahl27
opened
2 months ago
1
fix: Issue #101
#111
ahl27
opened
2 months ago
1
fix: Issue #106
#110
ahl27
opened
2 months ago
1
Biostrings::score ?
#109
urniaz
closed
2 months ago
5
add BiocStyle to setup chunk for Biocpkg calls in vignette
#107
LiNk-NY
closed
6 months ago
6
Unnecessary warning when using `readQualityScaledDNAStringSet`
#106
LTLA
opened
7 months ago
1
Storing list of phredquality in a data.frame/table
#105
gevro
closed
10 months ago
4
Error in reading fastq files
#104
apcristi
closed
9 months ago
4
segfault error when saving Biostrings output
#103
gevro
closed
10 months ago
2
Sequence indcies out of bound when using matchPattern.
#102
Dan-Lt
closed
5 months ago
1
consensusString and consensusMatrix error for legth-0 input
#101
jan-glx
opened
1 year ago
1
get Seq off limits
#100
MelinaKlostermann
closed
5 months ago
2
loading "tictoc" package makes the object lost and cannot assign again
#99
qifei9
closed
1 year ago
5
fix: ambiguity codes in `matchProbePair` (Issue #29)
#98
ahl27
closed
2 months ago
2
fix: Enforcing character set for `AAString` objects
#97
ahl27
closed
1 year ago
20
feat: Colored characters for AAStrings
#96
ahl27
closed
1 year ago
11
Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'raw'
#95
gevro
opened
1 year ago
24
How can I color labels of phylogenetic tree generated with plot.phylo (Biostrings) by a dataframe value and add a color legend?
#94
segarka
closed
5 months ago
1
Amino Acid sequence to letter function
#93
LiNk-NY
closed
2 months ago
10
alignedPattern and @pattern have different returns
#92
Close-your-eyes
closed
5 months ago
1
Converting MultipleAlignments.Rnw to Rmarkdown
#90
BerylKanali
closed
2 months ago
9
confused about reading in a single long fasta subject sequence for pattern matching
#89
tchrisboles
closed
1 year ago
4
trimLRPatterns with indels not trimming as intended in case of net insertions or deletions between subject and pattern?
#88
jan-glx
opened
1 year ago
2
Multiple alignments v1
#87
hsadia538
closed
1 year ago
1
Convert matchprobes.Rnw to matchprobes.Rmd
#86
hsadia538
closed
1 year ago
9
Biostrings/vignettes/MultipleAlignments.Rnw
#85
jwokaty
closed
1 year ago
0
AAString does not convert strings to upper case
#84
stitam
closed
5 months ago
1
Convert Biostrings2classes.Rnw to .Rmd
#83
villafup
opened
1 year ago
6
Matchprobes.Rnw to Rmd
#82
raoulkam
closed
1 year ago
0
pairwiseAlignment: documentation question
#81
gevro
closed
1 year ago
4
Missing documentation for compareStrings
#80
gevro
closed
1 year ago
2
Bug: AlignedSubject/AlignedPattern very slow
#79
gevro
closed
1 year ago
1
Bug: length of PairwiseAlignments
#78
gevro
closed
1 year ago
2
add option to make asymmetric nuc substitution matrix
#77
acvill
closed
1 year ago
4
Conversion matchprobes.Rnw to Rmd
#76
raoulkam
closed
1 year ago
1
bug (?) in DNAStringSetList element reassignment
#75
jayoung
closed
1 year ago
2
Matchprobes
#74
raoulkam
closed
2 years ago
4
Pairwise alignments
#73
raoulkam
closed
2 years ago
2
BiostringsQuickOverview.Rnw to Rmd
#72
raoulkam
closed
1 year ago
1
Multiple alignments - Update
#71
raoulkam
closed
2 years ago
2
Convertion MultipleAlignments.Rnw to Rmd
#70
raoulkam
closed
1 year ago
0
vmatchpattern() with max.mismatch= 1 gives less results than with max.mismatch =0
#69
LN-rich
closed
1 year ago
4
Error in .Call2("new_XStringSet_from_CHARACTER", class(x0), elementType(x0), : key 50 (char '2') not in lookup table
#68
safiqu
closed
2 years ago
1
NEWS/CHANGES: Not updated in 13+/9+ years
#67
HenrikBengtsson
closed
10 months ago
1
S.h seems to be deprecated
#66
tillea
closed
2 years ago
7
Encoding ASCII up to 255
#65
gevro
opened
2 years ago
33
Package installation fails in latest R 4.2.0-nightly
#64
mtiberti
closed
2 years ago
1
readAxt() and DNAStringSet() are unable to keep lowercase sequences
#63
Abrar2652
closed
2 years ago
1
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