-
Hi,
Is it okay to provide a range for upstream and leave the downstream as 0 if we would like to use distal peaks as a measure of gene activity in the integration of scATAC with scRNA seq datasets…
-
https://mp.weixin.qq.com/s/zSWKN8PE5naF6PUAG3LkgQ
ixxmu updated
3 years ago
-
Hi,
I am trying for several days to get scATAC-pro work and analyze my data from 10X scATAC-seq. It gives me many many many errors! I could manage to solve several of them but still not successful …
-
```
[sc_atac_seq_snare]
[salmon_rnaseq_snareseq]
[seqFISH_lab_processed]
[salmon_rnaseq_bulk]
[salmon_rnaseq_sciseq]
```
(there is also `['ATACseq-bulk]`... but I'm going to assume that's just …
-
1. It’s successful to run demplx_fastq or mapping function with the scATAC-pro program, and we have got some results.
2. However, we can not run the “MACS2” to do “call_peak”, and we also can not run…
-
Hi,
How can I access the features being expressed per cluster with the predicted.id subsequent to integration of scATAC and scRNA seq dataset using the Seurat Vignette.
Thanks!
-
Thanks for developing this!
Any plans to extend to scATAC-seq data?
-
Hi,
I am trying to integrate 3 data sets of 26x18000, 26x24000, 26x38000. I created seurat objects with each data set and ran "data.anchors
-
Hey, thanks for making such an awesome set of tools and providing such detailed feedback to other people's issues - huge help!
I'm a little confused about when I need to do normalization and on wha…
-
Hi,
I used STREAM for scATAC-Seq analysis and the results are good for the individual datasets. I then tried to use map_new_data function but it produced the following error, while it works for the …