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pinellolab
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STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
http://stream.pinellolab.org
GNU Affero General Public License v3.0
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error in detect_leaf_markers
#150
xyang2uchicago
opened
6 months ago
1
error when calling plot_stream()
#149
xyang2uchicago
opened
6 months ago
0
dimension_reduction failed for method='se'
#148
xyang2uchicago
opened
6 months ago
0
Error in glue(.Internal(R.home()), "library", "base", "R", "base", sep = .Platform$file.sep)
#147
TakashiKoyama
opened
8 months ago
0
A known bug related to `select_variable_genes`
#146
SummerColdWind
opened
10 months ago
0
TypeError: cannot unpack non-iterable int object
#145
aCompanionUnobtrusive
opened
10 months ago
0
Error when runing extend_elastic_principal_graph
#144
HarrisHan2k
opened
11 months ago
1
dimension_reduction jupyter kernel dies
#143
vjbaskar
opened
1 year ago
1
STREAM2 not found in conda channel
#142
Desi0
closed
1 year ago
0
Color palette in plot_flat_tree
#141
TarekGharsalli
opened
2 years ago
0
The first label is missing while plotting
#140
baigal628
closed
2 years ago
2
mapping scATAC-seq data with precomputated UMAP
#139
ccshao
opened
2 years ago
0
st.plot_stream error
#138
l-magnificence
closed
2 years ago
1
Error in st.cal_qc
#137
tianchen2019
opened
2 years ago
0
Stream 1.1 Error
#136
bellenger-l
opened
2 years ago
6
Issue with selecting cell types in the STREAM
#135
Pawan291
opened
2 years ago
2
AttributeError: 'Graph' object has no attribute 'node'
#134
Pawan291
closed
2 years ago
2
Stream v1.1
#133
huidongchen
closed
2 years ago
0
Fix bugs
#132
huidongchen
closed
2 years ago
0
same notebook gives different stream plots
#131
crazyhottommy
closed
2 years ago
9
Stream remove label ?
#130
TarekGharsalli
closed
2 years ago
11
import stream as st st.__version__
#129
sailseem
opened
3 years ago
4
st.add_cell_labels error: ValueError: Length mismatch
#128
XYZuo
opened
3 years ago
10
value of the legend
#127
yxiao832
closed
3 years ago
1
`uns_key` has no default`
#126
BioTechTimy
opened
3 years ago
1
Difference between branch and leaf branch ?
#125
bellenger-l
opened
3 years ago
0
stream container issue
#124
xiaowenchenjax
opened
3 years ago
0
Conda Installation Problems on Ubuntu 20.04
#123
saxovocal
closed
3 years ago
1
a legend bug
#122
wangli-sh
opened
3 years ago
3
STREAM2
#121
wajm
opened
3 years ago
1
Map new data when using Seurat object
#120
PeggySze
opened
3 years ago
9
stream import in conda env
#119
ajitjohnson
opened
3 years ago
4
dot size option?
#118
wajm
closed
3 years ago
1
h5Seurat format
#117
wajm
opened
3 years ago
8
plot function: branch or leaf
#116
MingBit
opened
3 years ago
2
Error with st.plot_stream()
#115
aradley
opened
3 years ago
1
colors in the plot function.
#114
MingBit
closed
3 years ago
17
stream web go error in docker
#113
Roger-GOAT
opened
3 years ago
0
Plot Gene Expression
#112
babramso
opened
3 years ago
1
How can I save the STREAM plot as high quality PDF file?
#111
crazyhottommy
closed
3 years ago
2
Merge with master branch
#110
qrzhang
closed
3 years ago
0
map_new_data align two sets poorly in umap.
#109
ccshao
closed
3 years ago
5
Error running detect_transition_markers
#108
ccruizm
closed
3 years ago
3
read in loom and get UnicodeDecodeError
#107
crazyhottommy
closed
3 years ago
2
Too big memory needed in st.normalize
#106
liushang20
opened
3 years ago
1
st.map_new_data use subset of var_genes?
#105
ccshao
closed
3 years ago
8
running peak analysis
#104
sylestiel
closed
3 years ago
10
legend text missing
#103
ccshao
closed
3 years ago
4
multicore option
#102
wajm
opened
3 years ago
1
Generation of adata.h5ad by using motif specific command line and Cell Ranger output files
#101
sylestiel
closed
3 years ago
18
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