pinellolab STREAM issues

pinellolab / STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

http://stream.pinellolab.org

GNU Affero General Public License v3.0

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issues

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error in detect_leaf_markers

#150 xyang2uchicago opened 1 month ago
0
error when calling plot_stream()

#149 xyang2uchicago opened 1 month ago
0
dimension_reduction failed for method='se'

#148 xyang2uchicago opened 1 month ago
0
Error in glue(.Internal(R.home()), "library", "base", "R", "base", sep = .Platform$file.sep)

#147 TakashiKoyama opened 3 months ago
0
A known bug related to `select_variable_genes`

#146 SummerColdWind opened 5 months ago
0
TypeError: cannot unpack non-iterable int object

#145 aCompanionUnobtrusive opened 6 months ago
0
Error when runing extend_elastic_principal_graph

#144 HarrisHan2k opened 6 months ago
1
dimension_reduction jupyter kernel dies

#143 vjbaskar opened 11 months ago
1
STREAM2 not found in conda channel

#142 Desi0 closed 1 year ago
0
Color palette in plot_flat_tree

#141 TarekGharsalli opened 1 year ago
0
The first label is missing while plotting

#140 baigal628 closed 1 year ago
2
mapping scATAC-seq data with precomputated UMAP

#139 ccshao opened 2 years ago
0
st.plot_stream error

#138 l-magnificence closed 2 years ago
1
Error in st.cal_qc

#137 tianchen2019 opened 2 years ago
0
Stream 1.1 Error

#136 bellenger-l opened 2 years ago
6
Issue with selecting cell types in the STREAM

#135 Pawan291 opened 2 years ago
2
AttributeError: 'Graph' object has no attribute 'node'

#134 Pawan291 closed 2 years ago
2
Stream v1.1

#133 huidongchen closed 2 years ago
0
Fix bugs

#132 huidongchen closed 2 years ago
0
same notebook gives different stream plots

#131 crazyhottommy closed 2 years ago
9
Stream remove label ?

#130 TarekGharsalli closed 2 years ago
11
import stream as st st.__version__

#129 sailseem opened 2 years ago
4
st.add_cell_labels error: ValueError: Length mismatch

#128 XYZuo opened 2 years ago
10
value of the legend

#127 yxiao832 closed 2 years ago
1
`uns_key` has no default`

#126 BioTechTimy opened 2 years ago
1
Difference between branch and leaf branch ?

#125 bellenger-l opened 2 years ago
0
stream container issue

#124 xiaowenchenjax opened 2 years ago
0
Conda Installation Problems on Ubuntu 20.04

#123 saxovocal closed 3 years ago
1
a legend bug

#122 wangli-sh opened 3 years ago
3
STREAM2

#121 wajm opened 3 years ago
1
Map new data when using Seurat object

#120 PeggySze opened 3 years ago
9
stream import in conda env

#119 ajitjohnson opened 3 years ago
4
dot size option?

#118 wajm closed 3 years ago
1
h5Seurat format

#117 wajm opened 3 years ago
8
plot function: branch or leaf

#116 MingBit opened 3 years ago
2
Error with st.plot_stream()

#115 aradley opened 3 years ago
1
colors in the plot function.

#114 MingBit closed 3 years ago
17
stream web go error in docker

#113 Roger-GOAT opened 3 years ago
0
Plot Gene Expression

#112 babramso opened 3 years ago
1
How can I save the STREAM plot as high quality PDF file?

#111 crazyhottommy closed 3 years ago
2
Merge with master branch

#110 qrzhang closed 3 years ago
0
map_new_data align two sets poorly in umap.

#109 ccshao closed 3 years ago
5
Error running detect_transition_markers

#108 ccruizm closed 3 years ago
3
read in loom and get UnicodeDecodeError

#107 crazyhottommy closed 3 years ago
2
Too big memory needed in st.normalize

#106 liushang20 opened 3 years ago
1
st.map_new_data use subset of var_genes?

#105 ccshao closed 3 years ago
8
running peak analysis

#104 sylestiel closed 3 years ago
10
legend text missing

#103 ccshao closed 3 years ago
4
multicore option

#102 wajm opened 3 years ago
1
Generation of adata.h5ad by using motif specific command line and Cell Ranger output files

#101 sylestiel closed 3 years ago
18