pinellolab STREAM issues

pinellolab / STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

http://stream.pinellolab.org

GNU Affero General Public License v3.0

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issues

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Seurat object

#100 wajm opened 3 years ago
26
Increase the line size in STREAM plot

#99 smk5g5 opened 3 years ago
3
no plot output with screen or saved pdf files way

#98 yiyelinfeng opened 3 years ago
3
Heatmap colors for plot_stream

#97 macros29 closed 4 years ago
2
Divergent and Transition Motifs

#96 sylestiel closed 4 years ago
4
Error with plot_de_markers

#95 macros29 closed 4 years ago
3
dimension_reduction() gives UnboundLocalError

#94 mcsimenc closed 4 years ago
2
KeyError when add_metadata()

#93 mcsimenc closed 4 years ago
2
Concatenate several anndata

#92 terooatt closed 4 years ago
3
Issue detecting leaf markers

#91 JDKaiser opened 4 years ago
3
Assigning Motifs to Kmers

#90 sylestiel closed 4 years ago
2
ValueError: zero-size array to reduction operation minimum which has no identity

#89 Isabelle-C opened 4 years ago
0
No se method for mapping in version 1

#88 leonardHerault opened 4 years ago
0
Issue with installation

#87 hemadelon opened 4 years ago
12
Updating dependencies

#86 nkanrar opened 4 years ago
0
Is there a way to label UMAPs produced by STREAM?

#85 smk5g5 closed 4 years ago
2
Attributes interpretation

#84 MingBit closed 4 years ago
4
Error when running python commandline.

#83 smk5g5 opened 4 years ago
4
When visualizing the Seurat Clusters I am not getting the correct output even though I have converted the seurat clusters pandas column to string.

#82 smk5g5 closed 4 years ago
6
Update URL on paragraph 139

#81 kant closed 4 years ago
0
Is it possible to add more than one label at a time with STREAM?

#80 smk5g5 closed 4 years ago
3
How to incorporate other motif databases aside from JASPAR in STREAM analysis of scATAC dataset

#79 sylestiel opened 4 years ago
4
latest docker image not working

#78 ccshao closed 4 years ago
2
Stream Installation, it hangs in solving environment

#77 linwang6 closed 4 years ago
19
Is log transformation and normalization required here?

#76 sylestiel closed 4 years ago
2
Is Log2 Transformation and Normalization Required?

#75 sylestiel closed 4 years ago
1
result of conda info stream=1.0 is empty

#74 cb4github closed 4 years ago
2
Docker image not up-to-date

#73 sinanassiri closed 4 years ago
3
Error when Extract Branches

#72 readline closed 4 years ago
2
ValueError: 'c' argument must be a color, a sequence of colors, or a sequence of numbers, not TGCACCTTCAGCTGGC-3

#71 yejg2017 opened 4 years ago
0
down sampling in st.map_new_data

#70 ccshao opened 4 years ago
2
AttributeError: 'Graph' object has no attribute 'node'

#69 yejg2017 opened 4 years ago
2
transpant hex color not used by streamplot

#68 ccshao closed 4 years ago
2
running time

#67 ahmedabbas81 closed 4 years ago
1
jaspar2016

#66 Brawni opened 4 years ago
1
Is there a way to know the progression of a cell along a branch ?

#65 abeaude closed 4 years ago
2
Dependencies issue

#64 abeaude closed 4 years ago
2
Integration with Scanpy

#63 chris-rands opened 4 years ago
0
Mapping KO data to trajectory built from WT data

#62 leiliuC opened 4 years ago
6
Mapping feature using scATAC-seq data

#61 carmenpetitjean opened 4 years ago
5
Issues with Selecting Variable Genes

#60 Olivia117 closed 4 years ago
1
scATAC-seq using k-mers tutorial using v.0.4.1

#59 carmenpetitjean closed 4 years ago
2
Error meaning? "Invalid value encountered in true_divide/greater" sc

#58 saramasarone closed 4 years ago
3
Failure to generate a plot after dimensionality reduction

#57 saramasarone closed 4 years ago
2
Per cell normalization

#56 JSchapke closed 4 years ago
1
identical pseudotime of cells

#55 ccshao closed 4 years ago
4
Issue with finding variable genes

#54 SathiyaNManivannan opened 4 years ago
6
map_new_data for scATAC-Seq data

#53 liaojinyue closed 4 years ago
6
Add new data matrix to AnnData and visualize it with stream plot

#52 liaojinyue opened 4 years ago
1
Issue with mapping step

#51 jipeifeng opened 4 years ago
2

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