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Sarah Hancock reported seeing the error messages below when submitting the IMI on the South America domain via the SLURM scheduler on Harvard's Cannon cluster.
```
/var/slurmd/spool/slurmd/job2924…
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I have built he containers for Pecube-D for the researcher im working with, it is working well in single process mode. When she tries to do the Monty Carlo options in the Pecube.in file it errors out…
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I run Flye 2.9.2 with the command
`flye --nano-raw $path_to_nanopore_reads --out-dir Flye_results --threads 22`
Flye crashes after writing "INFO: Correcting bubbles" to logs.
The file Flye_result…
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This is with ReFrame 4.2.0 (and also 4.1.0). This is in the oontext of the job failing to be submitted (in my case this was because a reservation was deleted while I was running ReFrame).
```
Trac…
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NERSC's [Snakemake docs][nersc-snake] lists Snakemake's "cluster mode" as a
_disadvantage_, since it submits each "rule" as a separate job, thereby
spamming the scheduler with dependent tasks. The m…
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Thanks for sharing your nice works, could you create a jupyter notebook to describe how to use your scripts? It will be a great help for new guys to PyAutoFEP
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Hi and thanks for the great work! I have finished all the preliminary steps and uses `python -m vall_e.train yaml=config/test/ar.yml` to train. It outputs something like this:
```
{'data_dirs': ['da…
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The batch submission script for gen_sampling_err_table in the repo, which can be found here:
`${DARTROOT}/assimilation_code/programs/gen_sampling_err_table/work/runme.lsf`
was created for the LSF sy…
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![image](https://user-images.githubusercontent.com/61819714/178399090-69dac6d1-b5d2-44a…
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I tried to use status monitoring by passing the `--parsable` flag and and adding either `cluster-status: status-sacct.sh` or `cluster-status: status-sacct.py`. I got the same error both times:
```she…